Pollen fertility

QTL Overview
QTL LabelqPOLF.Okitsu46/Okitsu56.LG06a.15
Published SymbolMS-F1
Trait NamePollen fertility
Trait AliasN/A
Trait StudyCitrus-Male_sterility-Goto-2018
PopulationOkitsu46/Okitsu56-F1
Female ParentOkitsu 46 Gou
Male ParentOkitsu 56 Gou
Colocalizing MarkerTSRA107
Neighboring MarkerN/A
EnvironmentJP_NARO_DivCtrRs_2015
LOD7.01
Additivity Dominance RatioN/A
R20.36
CommentsN/A
Contact
NameDetails
Tokurou Shimizu
First name:Tokurou
Last name:Shimizu
Institution:NARO Institute
Country:Japan
Email:tshimizu@affrc.go.jp
Last update:Nov 2016
Map Positions
#Map NameLinkage GroupBinChromosomePeakSpan StartSpan StopMapViewer
1Citrus-Okitsu46/Okitsu56-F1LG06aN/AN/A5--View
Sequences
The following sequences are available for this feature:

QTL from alignment at scaffold_6:2823296..2823475

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=180bp; location=Sequence derived from: scaffold_6:2823296..2823475 (Citrus clementina
TGCTTAAGGCGACGTAGGCGCACTCGCGCTTCCTTCTCCGCATTACTTGG
GGCAAACTGCTTTCGAAGTTCTTGCTTGAAGTCGGCCCAAGTGTCGATGG
TGCAAATGTCCTTGCCCATCTCGCCATGCTTGCGACGCCACCATAGTTGT
GCAGCGCCTCGAAGATAGGTGCGTGTTGTG
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QTL from alignment at chr6_v3.0:16628095..16628250

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=156bp; location=Sequence derived from: chr6_v3.0:16628095..16628250 (Citrus sinensis
TTTTTGAGAACCCAGCACTATACCGAATTACCGTTGTAGCCAAAGCCTCT
TCATAAATTTACAGCTGACAGCCAAAAAATCCTAAGCACCAATTCTTCAT
CTTCATGTTTATCTTCATCTTCAATTCTTTATGGTTGCTCTACTTTCTCT
AAATCC
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QTL from alignment at chrUn:8296603..8296768

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=166bp; location=Sequence derived from: chrUn:8296603..8296768 (Citrus maxima
GGATTTAGAGAAAGTAGAGCAACCATAAAGAATTGAAGATGAAGATAAAG
ATGAAGATGAAGATGAAGATGAAGAATTGGTGCTTAGGATTTTTTGGCTG
TCAGCTGTAAGTTTATGAAGAGGCTTTGGCTACAATGCCATTGGTATAGT
GCTGGGTTCTCAAAAA
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QTL from alignment at CM039166.1_Chr6_DVS_A:9700758..9700913

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=156bp; location=Sequence derived from: CM039166.1_Chr6_DVS_A:9700758..9700913 (Citrus sinensis
GGATTTAGAGAAAGTAGAGCAACCATAAAgaattgaagatgaagataaac
atgaagatgaagaattgGTGCTTAGGATTTTTTGGCTGTCAGCTGTAAAT
TTATGAAGAGGCTTTGGCTACAACGGTAATTCGGTATAGTGCTGGGTTCT
CAAAAA
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QTL from alignment at Chr06A:9878486..9878665

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=180bp; location=Sequence derived from: Chr06A:9878486..9878665 (Citrus limon
TTTTTGAGAACCCAGCACTATACCGAATTACCGATGGCATTGTAGCCAAA
GCCTCTTCATAAACTTACAGCTGACAGCCAAAAAATCCTAAGCACTAATT
CTTCATCTTCATCTTCATCTTCATCTTCATCTTTATCTTCATCTTCAATT
CTTTATGGTTGCTCTACTTTCTCTAAATCC
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QTL from alignment at Chr6:16071470..16071641

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=172bp; location=Sequence derived from: Chr6:16071470..16071641 (Citrus australis
TTTTTGAGAACCTAGCACTATACCGATGGCATTGTAGCCAAAGCCTCTTA
ATAAACTTACAGCTGACAGCCAAAAAATCCTAAGCACCAATTCTTCATCT
TCATCTTCATCTTCATCTTCATCTTTATCTTCATCTTCAATTCTTTATGG
TTGCTCTACTTTCTCTAAATCC
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QTL from alignment at chr6:10239735..10239894

Legend: genetic_marker
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=160bp; location=Sequence derived from: chr6:10239735..10239894 (Fortunella hindsii
GGATTTAGAGAAAGTAGAGCAACCATAAAGAATTGAAGATGAAGATAAAG
ATGAAGATGAAGATGAAGAATTGGTGGTTAGGATTTTTTGGCTGTCAGCT
GTAAGTTTATGAAGAGGCTTTGGCTACAATGCCATCGGTATAGTGCTGGG
TTCTCGAAAA
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