DY304864

Overview
NameDY304864
Unique NameDY304864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY304864 vs. ExPASy Swiss-Prot
Match: MNME_SYNP6 (tRNA modification GTPase mnmE OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=mnmE PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.803e-32
Identity = 82/174 (47.13%), Postives = 102/174 (58.62%), Query Frame = 2
Query:  275 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIXXXXXXXXXXXXXXXXXXXXWRPTSHVVEYGVVLD-RHGIVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVPSVRAKC 793
            TIAAI T+I    G+VGIVRLSG  A +I                    W   SH + YG + D   G +VDE L +PMLAPRSYTREDVVEL CHG  + +++ L+ C+ AGA LA+PGEFTLRAFLNGRLDLSQAE++  LIS             +QG     +  +R +C
Sbjct:    8 TIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQP--------WE--SHRILYGYIRDPESGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQLCIRAGARLAEPGEFTLRAFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRC 171          
BLAST of DY304864 vs. ExPASy Swiss-Prot
Match: MNME_SYNE7 (tRNA modification GTPase mnmE OS=Synechococcus elongatus (strain PCC 7942) GN=mnmE PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 5.803e-32
Identity = 82/174 (47.13%), Postives = 102/174 (58.62%), Query Frame = 2
Query:  275 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIXXXXXXXXXXXXXXXXXXXXWRPTSHVVEYGVVLD-RHGIVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVPSVRAKC 793
            TIAAI T+I    G+VGIVRLSG  A +I                    W   SH + YG + D   G +VDE L +PMLAPRSYTREDVVEL CHG  + +++ L+ C+ AGA LA+PGEFTLRAFLNGRLDLSQAE++  LIS             +QG     +  +R +C
Sbjct:    8 TIAAIATAIVPQQGSVGIVRLSGAAATEIARQIFQIAGQQP--------WE--SHRILYGYIRDPESGRLVDEALLLPMLAPRSYTREDVVELHCHGGLMPVQQTLQLCIRAGARLAEPGEFTLRAFLNGRLDLSQAESIADLISAQSPQAAQAALGSLQGKLGHPIRQLRDRC 171          
BLAST of DY304864 vs. ExPASy Swiss-Prot
Match: MNME_TRIEI (tRNA modification GTPase mnmE OS=Trichodesmium erythraeum (strain IMS101) GN=mnmE PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.688e-31
Identity = 80/174 (45.98%), Postives = 104/174 (59.77%), Query Frame = 2
Query:  275 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIXXXXXXXXXXXXXXXXXXXXWRPTSHVVEYGVVLDRH-GIVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVPSVRAKC 793
            TIAAI T+I    G+VGIVR+SG  A+ I                    W   +H + YG +   H G +VDE L + M APRSYTREDVVE  CHG  + +++VL+ C+EAGA LAQPGEFTLRAFLNGRLDL+QAE++ +L+             G+QG  +S +  +RA C
Sbjct:   11 TIAAIATAIVPQQGSVGIVRMSGSEAMKIAQTLFHAPGKQV--------WE--THHILYGYIRHPHTGQLVDETLLLIMKAPRSYTREDVVEFHCHGGIIAIQQVLQLCIEAGAELAQPGEFTLRAFLNGRLDLTQAESIAELVGSQSPAAAQVALAGLQGKLASPIRHLRACC 174          
BLAST of DY304864 vs. ExPASy Swiss-Prot
Match: MNME_ACAM1 (tRNA modification GTPase mnmE OS=Acaryochloris marina (strain MBIC 11017) GN=mnmE PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.880e-31
Identity = 82/174 (47.13%), Postives = 101/174 (58.05%), Query Frame = 2
Query:  275 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIXXXXXXXXXXXXXXXXXXXXWRPTSHVVEYGVVLDR-HGIVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVPSVRAKC 793
            TIAAI T+I    G++GIVRLSG  AV I                    W   SH V YG +       ++DE L + MLAPRSYTREDVVE  CHG  + +++VL ACL+AGA LAQPGEFTLRAFLNGRLDL+QAE V  L+             G+QG  +S +  +R +C
Sbjct:    5 TIAAIATAIVPQQGSIGIVRLSGVEAVSIAKQLFQTPGKQQ--------WE--SHRVLYGYIQQPLTQQIIDEGLLLLMLAPRSYTREDVVEFHCHGGMIAVQQVLEACLQAGAELAQPGEFTLRAFLNGRLDLTQAEGVADLVGARSPQAAQAALAGVQGKLASPIRELRQRC 168          
BLAST of DY304864 vs. ExPASy Swiss-Prot
Match: MNME_ANASP (tRNA modification GTPase mnmE OS=Anabaena sp. (strain PCC 7120) GN=mnmE PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.184e-30
Identity = 80/176 (45.45%), Postives = 102/176 (57.95%), Query Frame = 2
Query:  275 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIXXXXXXXXXXXXXXXXXXXXWRPTSHVVEYGVVLDRHGI---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVPSVRAKC 793
            TIAAI T+I    G+VGIVR+SG  A+ I                    W   SH + YG +  RH     +VDE L + M APRSYTREDVVE  CHG  + +++VL+ CLE+GA LAQPGEFTLRAFLNGRLDL+QAE++  L+             G+QG  +  +  +RA C
Sbjct:    6 TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFDAPGKQV--------WE--SHRILYGYI--RHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIIAVQQVLQLCLESGARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANC 169          
BLAST of DY304864 vs. ExPASy Swiss-Prot
Match: MNME_CYAP4 (tRNA modification GTPase mnmE OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=mnmE PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.159e-30
Identity = 81/175 (46.29%), Postives = 101/175 (57.71%), Query Frame = 2
Query:  272 RTIAAIVTSIGGPPGAVGIVRLSGPMAVDIXXXXXXXXXXXXXXXXXXXXWRPTSHVVEYGVVLD-RHGIVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVPSVRAKC 793
            +TIAAI T+I    G++ IVRLSG  AV I                    W   SH + YG V + R G  VDE L + MLAPRSYT+EDVVE  CHG  + +++VL+ CLEAGA LAQPGEFTLRAFL+GRLDL+QAE+V  L+             G+QG     +  +R  C
Sbjct:    6 QTIAAIATAIVPQQGSIAIVRLSGSEAVAIAQRLFIAPGQQV--------WE--SHRILYGYVCNPRTGQRVDEALLLLMLAPRSYTKEDVVEFHCHGGMIAVQQVLQLCLEAGAVLAQPGEFTLRAFLHGRLDLTQAESVADLVGAKSPQAAQAALAGLQGKLIQPLQQLRRTC 170          
BLAST of DY304864 vs. ExPASy Swiss-Prot
Match: MNME_ANAVT (tRNA modification GTPase mnmE OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=mnmE PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.094e-30
Identity = 80/176 (45.45%), Postives = 101/176 (57.39%), Query Frame = 2
Query:  275 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIXXXXXXXXXXXXXXXXXXXXWRPTSHVVEYGVVLDRHGI---VVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVPSVRAKC 793
            TIAAI T+I    G+VGIVR+SG  A+ I                    W   SH + YG +  RH     +VDE L + M APRSYTREDVVE  CHG  + +++VL+ CLE GA LAQPGEFTLRAFLNGRLDL+QAE++  L+             G+QG  +  +  +RA C
Sbjct:   10 TIAAIATAIVPQQGSVGIVRVSGSQAIAIAQTLFHAPGKQV--------WE--SHRILYGYI--RHPQTRQIVDEALLLLMKAPRSYTREDVVEFHCHGGIMAVQQVLQLCLEGGARLAQPGEFTLRAFLNGRLDLTQAESIADLVGARSPQAAQTALAGLQGKLAHPIRQLRANC 173          
BLAST of DY304864 vs. ExPASy Swiss-Prot
Match: MNME_SYNJB (tRNA modification GTPase mnmE OS=Synechococcus sp. GN=mnmE PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.580e-29
Identity = 76/170 (44.71%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  275 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIXXXXXXXXXXXXXXXXXXXXWRPTSHVVEYGVVLDRHGIVVDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVPSVR 784
            TIAAI T++    G+VGIVRLSG  A+ I                    W   SH + YG + D  G ++DE LAV M APRSYTREDV EL CHG  + ++  L+ CL  GA LAQPGEF+LRAFLNGR+DL+QAE+V  L++            G+QG     + ++R
Sbjct:   10 TIAAIATAVVPEQGSVGIVRLSGSRALPIVQAIFTPARRNAV-------WE--SHRLLYGWIRDEKGQILDEALAVWMQAPRSYTREDVAELHCHGGIMVVQATLQQCLRQGARLAQPGEFSLRAFLNGRIDLTQAESVADLVAARSPQAARMALAGLQGKLGGSIRALR 170          
BLAST of DY304864 vs. ExPASy Swiss-Prot
Match: MNME_THEEB (tRNA modification GTPase mnmE OS=Thermosynechococcus elongatus (strain BP-1) GN=mnmE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.521e-29
Identity = 80/174 (45.98%), Postives = 99/174 (56.90%), Query Frame = 2
Query:  275 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIXXXXXXXXXXXXXXXXXXXXWRPTSHVVEYGVVLDRHGIV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVPSVRAKC 793
            TIAAI T+I    G++GIVRLSG  AV I                    W   SH + YG V D      VDE L + MLAPRSYTREDVVE  CHG  + ++RVL+ C+ AGA LA PGEFTLRAFLNGRLDL+QAE+V +L++            G+ G  +  +  +R  C
Sbjct:    7 TIAAIATAIVPQQGSIGIVRLSGAKAVAIAQSLFEAPGKQP--------WE--SHRILYGYVRDPQTKERVDEALLLLMLAPRSYTREDVVEFHCHGGLIPVQRVLQLCVAAGARLADPGEFTLRAFLNGRLDLTQAESVAELVAAQSTTAAQIALAGLTGKLARPLQQIRQTC 170          
BLAST of DY304864 vs. ExPASy Swiss-Prot
Match: MNME_SYNEL (tRNA modification GTPase mnmE OS=Synechococcus elongatus GN=mnmE PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.521e-29
Identity = 80/174 (45.98%), Postives = 99/174 (56.90%), Query Frame = 2
Query:  275 TIAAIVTSIGGPPGAVGIVRLSGPMAVDIXXXXXXXXXXXXXXXXXXXXWRPTSHVVEYGVVLDRHGIV-VDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLEAGATLAQPGEFTLRAFLNGRLDLSQAENVEKLISXXXXXXXXXXXXGIQGGFSSLVPSVRAKC 793
            TIAAI T+I    G++GIVRLSG  AV I                    W   SH + YG V D      VDE L + MLAPRSYTREDVVE  CHG  + ++RVL+ C+ AGA LA PGEFTLRAFLNGRLDL+QAE+V +L++            G+ G  +  +  +R  C
Sbjct:    7 TIAAIATAIVPQQGSIGIVRLSGAKAVAIAQSLFEAPGKQP--------WE--SHRILYGYVRDPQTKERVDEALLLLMLAPRSYTREDVVEFHCHGGLIPVQRVLQLCVAAGARLADPGEFTLRAFLNGRLDLTQAESVAELVAAQSTTAAQIALAGLTGKLARPLQQIRQTC 170          
The following BLAST results are available for this feature:
BLAST of DY304864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MNME_SYNP65.803e-3247.13tRNA modification GTPase mnmE OS=Synechococcus sp.... [more]
MNME_SYNE75.803e-3247.13tRNA modification GTPase mnmE OS=Synechococcus elo... [more]
MNME_TRIEI1.688e-3145.98tRNA modification GTPase mnmE OS=Trichodesmium ery... [more]
MNME_ACAM12.880e-3147.13tRNA modification GTPase mnmE OS=Acaryochloris mar... [more]
MNME_ANASP3.184e-3045.45tRNA modification GTPase mnmE OS=Anabaena sp. (str... [more]
MNME_CYAP44.159e-3046.29tRNA modification GTPase mnmE OS=Cyanothece sp. (s... [more]
MNME_ANAVT7.094e-3045.45tRNA modification GTPase mnmE OS=Anabaena variabil... [more]
MNME_SYNJB1.580e-2944.71tRNA modification GTPase mnmE OS=Synechococcus sp.... [more]
MNME_THEEB3.521e-2945.98tRNA modification GTPase mnmE OS=Thermosynechococc... [more]
MNME_SYNEL3.521e-2945.98tRNA modification GTPase mnmE OS=Synechococcus elo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ9YP01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY304864 ID=DY304864; Name=DY304864; organism=Citrus clementina; type=EST; length=894bp
TTTACTCCCATCACTCCGCTCCGTGATCACCCACCAGCTCCACCACAGAC
CTCCGCCACCGCCGCCACTGCTCTCGATAGCTTCATTTCTCTTTCACAAA
CCGAAACTTCGGAGAACCACTTGCAAAAATCTCTCATTTTCCTTCTCTTC
CTCTTCTAAACCCATAACCCATAACCCCCTTGCCACCCCAAAAGATAACA
AGCTGGTTTTCAAAAAAGACGAGCGATTGGTTGCTGATAATGGTGAGAGT
GAAGAAAAGGCTGCAACTTTTAGGACTATTGCAGCTATTGTGACTTCCAT
AGGTGGCCCGCCAGGCGCTGTGGGGATTGTACGGTTGTCGGGCCCCATGG
CTGTGGATATTGTTGGGCGAGTGTTTAAACCGGTGAAGAAAAAGAAGAAG
AAGAGTTCCGGTTCTGTTTCGTGGCGGCCCACTAGCCATGTTGTTGAGTA
CGGTGTCGTTTTGGATCGTCACGGGATTGTTGTCGATGAGGTTTTAGCTG
TTCCCATGTTGGCCCCAAGATCTTACACCCGTGAAGATGTGGTTGAGCTT
CAATGTCACGGTAGTGAAGTGTGTCTGCGCCGTGTGTTAAGAGCTTGTTT
AGAAGCTGGGGCGACCCTTGCTCAACCAGGCGAGTTCACTCTCCGCGCCT
TTCTCAATGGCCGCTTAGACCTATCTCAAGCTGAAAATGTTGAAAAGTTA
ATTTCAGCAAAGTCTGTGGCTGCTGCAGATGCAGCTTTGGCAGGAATTCA
GGGGGGCTTCTCTTCCTTGGTCCCGTCAGTGAGAGCGAAGTGCATCCGAG
TTGGCTAACTGAGATTGAGGCTCGTTTAAATTTTGGATGAAGAAAAGGCC
TCCTCCCAATTTAAAATCTGGTTTATGAAAAAAATACCCCCCAA
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