FC921732

Overview
NameFC921732
Unique NameFC921732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length366
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921732 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.390e-25
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    3 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:   97 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150
[Close]
BLAST of FC921732 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.390e-25
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    3 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:  213 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266
[Close]
BLAST of FC921732 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.122e-25
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    3 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 164
            KELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  210 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
[Close]
BLAST of FC921732 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.122e-25
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    3 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 164
            KELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  210 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
[Close]
BLAST of FC921732 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.325e-25
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    3 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWA+ATNFVPGK
Sbjct:  212 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265
[Close]
BLAST of FC921732 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.325e-25
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    3 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  212 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
[Close]
BLAST of FC921732 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.955e-25
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    3 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  212 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265
[Close]
BLAST of FC921732 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.549e-24
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 3 
Query:    3 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWAYATNFVPGK
Sbjct:  184 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237
[Close]
BLAST of FC921732 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.024e-24
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 3 
Query:    3 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 164
            KELKNGRLAMFSMFGFFVQAIVTGKGPI+NLYDH+ADPVANNAWA+ATNFVPG+
Sbjct:  212 KELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265
[Close]
BLAST of FC921732 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.508e-24
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 3 
Query:    3 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 164
            KE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWA+ATNFVPGK
Sbjct:  211 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264
The following BLAST results are available for this feature:
BLAST of FC921732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB22_PINSY2.390e-2596.30Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_PINTH2.390e-2596.30Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_ORYSJ3.122e-2596.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.122e-2596.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP5.325e-2594.44Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_TOBAC5.325e-2594.44Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_GOSHI6.955e-2594.44Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB25_SOLLC1.549e-2496.30Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB215_PEA2.024e-2492.59Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_LEMGI4.508e-2494.44Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC32108F11EF RVDevelopN Citrus clementina cDNA clone C32108F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921732 ID=FC921732; Name=FC921732; organism=Citrus clementina; type=EST; length=366bp
TCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTC
TTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGA
CCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACT
TTGTTCCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATC
TGTAACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCAT
GGACTTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTG
ATCCTTTATTTCCATCAGAATTTCAGAAGTTGATTTACAAAANAAAAAAA
AAAAAAAAAAAAAAAA
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