FC928658

Overview
NameFC928658
Unique NameFC928658
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length436
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC928658 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 9.063e-34
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 3 
Query:  111 ASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXXXXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSLAFYPGAR 431
            A +PRTVEE+++DF  RRAG+++ALT DV EF+ LCDP+KENLCLYGHPNE W                  GINFARDGM  KDWLSLVAVH+D+WLL++AF+ GAR
Sbjct:    6 AYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGAR 112
The following BLAST results are available for this feature:
BLAST of FC928658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH9.063e-3460.75PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YH15FM1 TF Citrus clementina cDNA clone KN0AAP6YH15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928658 ID=FC928658; Name=FC928658; organism=Citrus clementina; type=EST; length=436bp
CTCTAATTCAAACTTTTCCAGTTCGTCCAATTCGCTCCTCTAATTAAATC
CAATTTAATAGAATCTCACTTACTAATTAGATCTCCAATATTTGCTTTGC
TATGGAAATGGCCTCCAGCCCCCGCACCGTGGAGGAGATCTACAAAGATT
TCTGCGCTCGTAGAGCCGGCGTTGTTCGCGCTTTAACTAACGATGTCGAT
GAATTTTACGGACTCTGCGATCCAGATAAGGAGAATCTGTGCTTGTACGG
CCATCCTAATGAGTCGTGGGAAGTGACGTTGCCGGCAGAGGAAGTTCCGC
CGGAGCTTCCTGAGCCGGCACTTGGGATTAATTTTGCGAGAGATGGGATG
AACAGGAAGGACTGGCTGTCTTTGGTTGCAGTGCACACTGATTCATGGTT
GCTTTCACTGGCTTTTTATCCTGGAGCTCGTCTTAA
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