FC928664

Overview
NameFC928664
Unique NameFC928664
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928664 vs. ExPASy Swiss-Prot
Match: NUDC2_MOUSE (NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 1
Query:   64 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGS 474
            E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS A+ +G+
Sbjct:    6 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISGN 144          
BLAST of FC928664 vs. ExPASy Swiss-Prot
Match: NUDC2_HUMAN (NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 1
Query:   64 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGS 474
            E+R   +  G    +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS A+ +G+
Sbjct:    6 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISGN 144          
BLAST of FC928664 vs. ExPASy Swiss-Prot
Match: NUDC2_RAT (NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 1
Query:  106 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGS 474
            +W QTL+E+ I + +PP   ++   C +QS+H+ L + G    L  +L      D   WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS A+ +G+
Sbjct:   20 QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISGN 144          
The following BLAST results are available for this feature:
BLAST of FC928664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NUDC2_MOUSE6.721e-2138.57NudC domain-containing protein 2 OS=Mus musculus G... [more]
NUDC2_HUMAN6.721e-2138.57NudC domain-containing protein 2 OS=Homo sapiens G... [more]
NUDC2_RAT8.778e-2140.48NudC domain-containing protein 2 OS=Rattus norvegi... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YG07FM1 TF Citrus clementina cDNA clone KN0AAP1YG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928664 ID=FC928664; Name=FC928664; organism=Citrus clementina; type=EST; length=691bp
GAAATTCCAAGAATGCTCGAAGAGCAGACAGAGACCCTAGAAATGGCGGA
GAAATTGGCGCCCGAGAAACGGCATCGTTTCCTCCACAACGGCCAAACAG
TATTTGAATGGGATCAAACCCTAGACGAGATAAATATTTACATAAATTTA
CCGCCAAATGTTCACTCGAAGCAATTTTATTGCAAGATTCAATCAAAACA
TATTGAACTTGGCATCAAAGGCAACCCCCCTTATCTCAATCATGAACTCA
CCTGTCCGGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGATGTG
ATGCACATAACATTGACGAAAAGGGATAAGGGTCAGACTTGGGCTTCGCC
TATAATGGGTCAGGGTCAGCTCGACCCTTATGTCACTGATCAAGAACAGA
AGCGTCTCATGCTGCAGAGGTTCCAAGAAGAGAATCCGGGTTTTGACTTC
TCGCAGGCACAATTTACAGGTAGCTGCCCCGACCCAAGGACCTTTATGGG
TGGGATCCGCTCTGATTGACAATGTTACTATGCTACATTGCTTACTTGTA
TTAAGTCTGTAGCATTATTTACTTGTATTAAGCCTATTATAATCCTGACA
CTCTCTCGGTAAATAAAAACAATCTGATTTCCGTCAGTGTTCAGGTATTC
TATGTAAAACTGTATTGACCTTGGCCAATGATTGTGGTCAC
back to top