CF838856

Overview
NameCF838856
Unique NameCF838856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838856 vs. ExPASy Swiss-Prot
Match: YFJP_BACSU (Putative DNA-3-methyladenine glycosylase yfjP OS=Bacillus subtilis GN=yfjP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.658e-20
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 3
Query:   24 PETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWRFVE 407
            PET+  L  Q LR +  S RKA Y  D +R    G LS S + +M D+ +   L  + GIG W+V   ++F L RP++ P+ D+G++  ++  + L++ P    M  + ++W PY S AS YLWR +E
Sbjct:  160 PETIAELDYQDLRDLQFSMRKAEYTIDTSRMIAEGTLSLSELPHMADEDIMKKLIKIRGIGPWTVQNVLMFGLGRPNLFPLADIGLQNAIKRHFQLDDKPAKDVMLAMSKEWEPYLSYASLYLWRSIE 287          
BLAST of CF838856 vs. ExPASy Swiss-Prot
Match: MAG1_SCHPO (DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe GN=mag1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.832e-16
Identity = 42/126 (33.33%), Postives = 71/126 (56.35%), Query Frame = 3
Query:   24 PETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGIL-SDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWR 398
            PE +  +  + +R  G S RK   L  +A    +G++ +      + ++ L   LT + GIG W+V M +IFSL+R DV+P +DL +R G + L+ L ++P    + +  E   P+R+ A+WYLW+
Sbjct:   87 PEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHSEICAPFRTAAAWYLWK 212          
BLAST of CF838856 vs. ExPASy Swiss-Prot
Match: MAG2_SCHPO (Probable DNA-3-methyladenine glycosylase 2 OS=Schizosaccharomyces pombe GN=SPBC23G7.11 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.714e-14
Identity = 36/126 (28.57%), Postives = 71/126 (56.35%), Query Frame = 3
Query:   24 PETVLALTPQQLRQIGVSGRKASYLHDLARKYQNG-ILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWR 398
            P+ ++    + L + G S  K+  +H +A    N  I S S I  M ++ L   L+ + G+  W++ M+ IF+L R D++P +D  ++   +  + L   P+  ++++L +  +PYR++A+WYLW+
Sbjct:   79 PKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQ 204          
BLAST of CF838856 vs. ExPASy Swiss-Prot
Match: 3MGA_BACSU (DNA-3-methyladenine glycosylase OS=Bacillus subtilis GN=alkA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.223e-13
Identity = 35/124 (28.23%), Postives = 68/124 (54.84%), Query Frame = 3
Query:   27 ETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYSLEELPRPSQMDQLCEKWRPYRSVASWYLWR 398
            E +  LTP  L  I ++ +K+ Y+  +AR   +G LS   ++ M+ K     L  + GIG W+ +  ++  L  P   PI+D+G+   +++L ++   P   ++ ++   W+ ++S A++YLWR
Sbjct:  177 ERIARLTPTDLADIKMTVKKSEYIIGIARLMASGELSREKLMKMNFKDAEKNLIKIRGIGPWTANYVLMRCLRFPTAFPIDDVGLIHSIKILRNMNRKPTKDEILEISVPWKEWQSYATFYLWR 300          
The following BLAST results are available for this feature:
BLAST of CF838856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YFJP_BACSU4.658e-2036.72Putative DNA-3-methyladenine glycosylase yfjP OS=B... [more]
MAG1_SCHPO1.832e-1633.33DNA-3-methyladenine glycosylase 1 OS=Schizosacchar... [more]
MAG2_SCHPO1.714e-1428.57Probable DNA-3-methyladenine glycosylase 2 OS=Schi... [more]
3MGA_BACSU4.223e-1328.23DNA-3-methyladenine glycosylase OS=Bacillus subtil... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06M20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838856 ID=CF838856; Name=CF838856; organism=Citrus sinensis; type=EST; length=492bp
GTGGTGGCGAAGCTGGAGTCGTTCCAGAGACGGTCCTTGCTTTAACCCCT
CAACAGCTGCGACAAATTGGGGTCTCAGGCCGGAAGGCGAGTTATCTTCA
CGATCTCGCGAGAAAATACCAGAATGGAATACTGTCTGACTCCGCGATTG
TAAATATGGATGATAAATCGCTCTTCACGATGCTTACAATGGTTAATGGA
ATCGGCTCATGGTCGGTACACATGTTCATGATTTTCTCGCTGCATAGACC
GGATGTTTTGCCGATTAACGATCTCGGTGTGAGGAAAGGAGTTCAGTTGC
TGTACAGTTTGGAGGAGTTGCCAAGGCCGTCACAGATGGACCAGTTGTGT
GAGAAGTGGAGGCCATATAGGTCTGTGGCTTCGTGGTATCTATGGAGGTT
TGTGGAAGCCAAGGGAGCACCTTCTAGTGCGGCGGCAGTGGCGGCTGGTG
CTGCATTGCCGCAGCCACAGCATGAGGAGCAGCAGCAGCCTC
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