CF838909

Overview
NameCF838909
Unique NameCF838909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838909 vs. ExPASy Swiss-Prot
Match: GSH1_TOBAC (Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 4.754e-61
Identity = 125/186 (67.20%), Postives = 138/186 (74.19%), Query Frame = 1
Query:  220 MTLISRASPSCRVLTDVTRCTIRRSGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETL 777
            M L+S+A  S  + ++  +C    SG   +  N E  +MK+ C   + SSR S+K  Q ++LD             VAASPPTEDAVV  EPLTKEDLV YLASGCK KEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLN IAERFDWEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETL
Sbjct:    1 MALMSQAGSSHCIYSEKMKCI---SGHSSITSNMEMLKMKDICFG-NISSRNSSKPMQGIYLDRVGVERRRGRLAIVAASPPTEDAVVAAEPLTKEDLVAYLASGCKSKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNGIAERFDWEKVMEGDNIIGLKQGKQSISLEPGGQFELSGAPLETL 182          
BLAST of CF838909 vs. ExPASy Swiss-Prot
Match: GSH1_SOLLC (Glutamate--cysteine ligase, chloroplastic OS=Solanum lycopersicum GN=GSH1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.359e-60
Identity = 122/186 (65.59%), Postives = 138/186 (74.19%), Query Frame = 1
Query:  220 MTLISRASPSCRVLTDVTRCTIRRSGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETL 777
            M L+S+A  S  + ++  RC    SG   +  N +  RM+E C     SSR +++  Q  +L++            VAASPPTEDAVV  EPLTKEDLVGYLASGCK KEKWRIGTEHEKFGFEFGTLRPMKY+QIA+LLN IAERFDWEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETL
Sbjct:    1 MALMSQAGSSHCIYSEKVRCI---SGHRSIINNMDMFRMREICFGVDISSRNASRRVQGNYLNHIGVGSRRGDLTIVAASPPTEDAVVAAEPLTKEDLVGYLASGCKSKEKWRIGTEHEKFGFEFGTLRPMKYDQIADLLNGIAERFDWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETL 183          
BLAST of CF838909 vs. ExPASy Swiss-Prot
Match: GSH1_ARATH (Glutamate--cysteine ligase, chloroplastic OS=Arabidopsis thaliana GN=GSH1 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.648e-53
Identity = 117/187 (62.57%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  220 MTLISRASPSCRVL-TDVTRCTIRRSGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETL 777
            M L+S+A  S  V+ + V      ++ V G  +N +  RMKE   +F SS  YS  +S    L ++           VAASPPTE+AVV TEPLT+EDL+ YLASGCK K+K+RIGTEHEKFGFE  TLRPMKY+QIAELLN IAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETL
Sbjct:    1 MALLSQAGGSYTVVPSGVCSKAGTKAVVSGGVRNLDVLRMKE---AFGSS--YSRSLSTKSMLLHSVKRSKRGHQLIVAASPPTEEAVVATEPLTREDLIAYLASGCKTKDKYRIGTEHEKFGFEVNTLRPMKYDQIAELLNGIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETL 182          
BLAST of CF838909 vs. ExPASy Swiss-Prot
Match: GSH1_BRAJU (Glutamate--cysteine ligase, chloroplastic OS=Brassica juncea GN=GSH1 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.127e-53
Identity = 110/163 (67.48%), Postives = 120/163 (73.62%), Query Frame = 1
Query:  289 RSGVCGLAKNAEASRMKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETL 777
            R+G   ++      RMKET VS           S+ L   +            VAASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE  TLRPMKY+QIAELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETL
Sbjct:   21 RTGTKTVSGCVNVLRMKETYVS---------SYSRTLSTKSMLKRSKRGHQLIVAASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIAELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETL 174          
BLAST of CF838909 vs. ExPASy Swiss-Prot
Match: GSH1_MEDTR (Glutamate--cysteine ligase, chloroplastic OS=Medicago truncatula GN=GSH1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.365e-52
Identity = 106/150 (70.67%), Postives = 120/150 (80.00%), Query Frame = 1
Query:  334 MKETCVS--FSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETL 777
            +++T +S  FS SS+ S    ++L    +           VAASPPTEDAVV TEPLTK+DL+ YLASGCK K+KWRIGTEHEKFGFE G+LRPMKYEQI+ELLN IAERFDW+KVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETL
Sbjct:   26 IRKTSISNTFSFSSKNSLSFKRILTSGGSRRFI-------VAASPPTEDAVVATEPLTKQDLIDYLASGCKTKDKWRIGTEHEKFGFELGSLRPMKYEQISELLNGIAERFDWDKVMEGDNIIGLKQGKQSISLEPGGQFELSGAPLETL 168          
BLAST of CF838909 vs. ExPASy Swiss-Prot
Match: GSH1A_ORYSJ (Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.991e-47
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 1
Query:  448 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETL 777
            VAASPPTE+AV +TEPLTKEDLV YL SGCKPKE WRIGTEHEKFGFE  TLRP+KY+QI ++LN +AERFDW+K++E + +IGLKQGKQSISLEPGGQFELSGAPLETL
Sbjct:   43 VAASPPTEEAVQMTEPLTKEDLVAYLVSGCKPKENWRIGTEHEKFGFEVDTLRPIKYDQIRDILNGLAERFDWDKIVEENNVIGLKQGKQSISLEPGGQFELSGAPLETL 152          
BLAST of CF838909 vs. ExPASy Swiss-Prot
Match: GSH1A_ORYSI (Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-1 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.991e-47
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 1
Query:  448 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETL 777
            VAASPPTE+AV +TEPLTKEDLV YL SGCKPKE WRIGTEHEKFGFE  TLRP+KY+QI ++LN +AERFDW+K++E + +IGLKQGKQSISLEPGGQFELSGAPLETL
Sbjct:   43 VAASPPTEEAVQMTEPLTKEDLVAYLVSGCKPKENWRIGTEHEKFGFEVDTLRPIKYDQIRDILNGLAERFDWDKIVEENNVIGLKQGKQSISLEPGGQFELSGAPLETL 152          
BLAST of CF838909 vs. ExPASy Swiss-Prot
Match: GSH1B_ORYSJ (Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-2 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.664e-47
Identity = 87/110 (79.09%), Postives = 100/110 (90.91%), Query Frame = 1
Query:  448 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETL 777
            VAASPPTE+AV +TEPLTKEDL+ YL SGCKPKE WRIGTEHEKFGFE  TLRP+KY+QI ++LN +AERFDW+K++E + +IGLKQGKQSISLEPGGQFELSGAPLETL
Sbjct:   47 VAASPPTEEAVQMTEPLTKEDLMAYLVSGCKPKENWRIGTEHEKFGFEVDTLRPIKYDQIRDILNGLAERFDWDKIVEENNVIGLKQGKQSISLEPGGQFELSGAPLETL 156          
BLAST of CF838909 vs. ExPASy Swiss-Prot
Match: GSH1B_ORYSI (Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-2 PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.664e-47
Identity = 87/110 (79.09%), Postives = 100/110 (90.91%), Query Frame = 1
Query:  448 VAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLRPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETL 777
            VAASPPTE+AV +TEPLTKEDL+ YL SGCKPKE WRIGTEHEKFGFE  TLRP+KY+QI ++LN +AERFDW+K++E + +IGLKQGKQSISLEPGGQFELSGAPLETL
Sbjct:   47 VAASPPTEEAVQMTEPLTKEDLMAYLVSGCKPKENWRIGTEHEKFGFEVDTLRPIKYDQIRDILNGLAERFDWDKIVEENNVIGLKQGKQSISLEPGGQFELSGAPLETL 156          
The following BLAST results are available for this feature:
BLAST of CF838909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GSH1_TOBAC4.754e-6167.20Glutamate--cysteine ligase, chloroplastic OS=Nicot... [more]
GSH1_SOLLC2.359e-6065.59Glutamate--cysteine ligase, chloroplastic OS=Solan... [more]
GSH1_ARATH3.648e-5362.57Glutamate--cysteine ligase, chloroplastic OS=Arabi... [more]
GSH1_BRAJU8.127e-5367.48Glutamate--cysteine ligase, chloroplastic OS=Brass... [more]
GSH1_MEDTR2.365e-5270.67Glutamate--cysteine ligase, chloroplastic OS=Medic... [more]
GSH1A_ORYSJ2.991e-4780.00Glutamate--cysteine ligase A, chloroplastic OS=Ory... [more]
GSH1A_ORYSI2.991e-4780.00Glutamate--cysteine ligase A, chloroplastic OS=Ory... [more]
GSH1B_ORYSJ6.664e-4779.09Glutamate--cysteine ligase B, chloroplastic OS=Ory... [more]
GSH1B_ORYSI6.664e-4779.09Glutamate--cysteine ligase B, chloroplastic OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06P07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838909 ID=CF838909; Name=CF838909; organism=Citrus sinensis; type=EST; length=777bp
CGTTTATAGCAGGTTCTGTATATAATAACACTAACGTCTACCCTTACTCA
CAAGAAAACCAAAGTCCCTCTCTCTCTCTCTGCATTCTGCAAGTGAGTCT
TCGCTGTCCTATATACATATATAACTCAACGAGTGTTTTATCTTCTACGA
AATTCGAAACCCTAGTTTTTAAGATTCCAATTGTGGTAATTCGTTCAGCG
TTAACCAAGCGGGAGCAGTATGACTCTCATTTCGCGGGCCAGTCCATCAT
GTCGTGTATTGACTGATGTAACACGATGTACAATCAGACGAAGTGGGGTT
TGTGGCTTGGCAAAAAATGCTGAGGCATCTAGGATGAAGGAAACTTGTGT
TAGTTTCTCTTCCTCATCACGCTATTCTGCCAAGATATCACAAGTTTTAC
ATCTAGACAATGCAGGGATAGGAATTCGAAGAGGACGTCGATCTATTGTT
GCAGCTAGTCCTCCCACGGAGGATGCTGTTGTTGTAACGGAGCCATTGAC
CAAAGAGGATCTAGTTGGATACCTTGCCTCTGGGTGCAAGCCTAAGGAAA
AGTGGAGAATTGGTACAGAACATGAGAAGTTTGGTTTTGAGTTTGGAACT
TTACGTCCTATGAAATACGAACAAATAGCCGAGTTGCTTAACAGCATTGC
TGAGAGGTTCGATTGGGAGAAAGTAATGGAAGGAGATTACATCATAGGAC
TGAAACAAGGGAAACAAAGCATATCACTTGAACCTGGCGGTCAGTTTGAG
CTTAGTGGTGCACCTCTTGAAACTCTG
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