EY727946

Overview
NameEY727946
Unique NameEY727946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length979
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727946 vs. ExPASy Swiss-Prot
Match: LPAT2_BRAOL (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica oleracea GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.395e-21
Identity = 77/175 (44.00%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  292 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKE--TCTCCFQSQK*HXXXXXXXFWLSGQVV------LVTHWAVMKKSSKFLPGKGGARGVFGKTPFGKKNRGKRKESPLKVEVPHGQKKI--ILNPFWVKL 786
            VPLG+LFFISGLVVNL+QAVC+V IRPLSKNTYR+INR                 AGVKI++F D ET+  MGKE     C  +S            WL G ++      L +  AVMKKSSKFLP  G +   F +  F ++N  K  ES LK     G +++     PFW+ L
Sbjct:   10 VPLGILFFISGLVVNLLQAVCYVLIRPLSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADDETFNRMGKEHALVVCNHRSD---------IDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMW-FSEYLFLERNWAK-DESTLK----SGLQRLNDFPRPFWLAL 169          
BLAST of EY727946 vs. ExPASy Swiss-Prot
Match: LPAT2_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.379e-21
Identity = 77/175 (44.00%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  292 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKE--TCTCCFQSQK*HXXXXXXXFWLSGQVV------LVTHWAVMKKSSKFLPGKGGARGVFGKTPFGKKNRGKRKESPLKVEVPHGQKKI--ILNPFWVKL 786
            VPLGLLFFISGL VNL QAVC+V IRPLSKNTYR+INR                 AGVKI++F D ET+  MGKE     C  +S            WL G ++      L +  AVMKKSSKFLP  G +   F +  F ++N  K  ES LK     G +++     PFW+ L
Sbjct:    9 VPLGLLFFISGLAVNLFQAVCYVLIRPLSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADNETFNRMGKEHALVVCNHRSD---------IDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMW-FSEYLFLERNWAK-DESTLK----SGLQRLSDFPRPFWLAL 168          
BLAST of EY727946 vs. ExPASy Swiss-Prot
Match: LPAT2_BRANA (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica napus GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.039e-21
Identity = 74/175 (42.29%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  292 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKE--TCTCCFQSQK*HXXXXXXXFWLSGQVV------LVTHWAVMKKSSKFLPGKGGARGVFGKTPFGKKNRGKRKESPLKVEVPHGQKKI--ILNPFWVKL 786
            VPLG+LFFISGLVVNL+QAVC+V +RP+SKNTYR+INR                 AGVKI++F D ET+  MGKE     C  +S            WL G ++      L +  AVMKKSSKFLP  G +   F +  F ++N  K  ES L+     G +++     PFW+ L
Sbjct:    9 VPLGILFFISGLVVNLLQAVCYVLVRPMSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADDETFNRMGKEHALVVCNHRSD---------IDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMW-FSEYLFLERNWAK-DESTLQ----SGLQRLNDFPRPFWLAL 168          
BLAST of EY727946 vs. ExPASy Swiss-Prot
Match: LPAT_MAIZE (1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 OS=Zea mays GN=PLS1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.462e-18
Identity = 70/171 (40.94%), Postives = 88/171 (51.46%), Query Frame = 1
Query:  292 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKETCTCCFQSQK*HXXXXXXXFWLSGQVV------LVTHWAVMKKSSKFLPGKGGARGVFGKTPFGKKNRGKRKESPLKVEVPHGQKKIILNPFWVKL 786
            +PLGLLF +SGL+VN IQAV FVTIRP SK+ YRRINR                 AGVK++L  D ETYR MGKE        +           WL G ++      L +  AVMKKSSKFLP  G +   F +  F +++  K  E  LK  +   + K    PFW+ L
Sbjct:   10 LPLGLLFLLSGLIVNAIQAVLFVTIRPFSKSFYRRINRFLAELLWLQLVWVVDWWAGVKVQLHADEETYRSMGKEHALIISNHRS-------DIDWLIGWILAQRSGCLGSTLAVMKKSSKFLPVIGWSMW-FAEYLFLERSWAK-DEKTLKWGLQ--RLKDFPRPFWLAL 169          
BLAST of EY727946 vs. ExPASy Swiss-Prot
Match: LPAT3_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=LPAT3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.384e-13
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  292 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKETCTCCFQSQK*HXXXXXXXFWLSGQVV------LVTHWAVMKKSSKFLP 645
            +P+G+LF ISGL+VN+IQ V F+ +RP S++ YRRIN+                 A +KI L+VD ET  L+GKE        +           WL G V+      L +  A+MKK +K+LP
Sbjct:   10 IPVGVLFLISGLIVNIIQLVFFIIVRPFSRSLYRRINKNVAELLWLQLIWLFDWWACIKINLYVDAETLELIGKEHALVLSNHRS-------DIDWLIGWVMAQRVGCLGSSLAIMKKEAKYLP 126          
The following BLAST results are available for this feature:
BLAST of EY727946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LPAT2_BRAOL1.395e-2144.001-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_ARATH2.379e-2144.001-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_BRANA9.039e-2142.291-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT_MAIZE2.462e-1840.941-acyl-sn-glycerol-3-phosphate acyltransferase PLS... [more]
LPAT3_ARATH2.384e-1337.101-acyl-sn-glycerol-3-phosphate acyltransferase 3 O... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-107-E04-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727946 ID=EY727946; Name=EY727946; organism=Citrus sinensis; type=EST; length=979bp
CATTTCTCGAAATGTGAAAACTCGCCTTTAAAGCTCAAACACCGTCTTCT
TCGTGACCTCTATCTCCCCAAATTTATTATAAATATTACAATAAAAACGA
TAATAAATGATCTCATCAATTAATTTCAATTTCAGCATCTTATTTAAAAT
CTCAGATTTATTATAATCTCTTCTTGTTTTGCAAAGCGAACCCTCATTCT
CTCTCTACAAATCAGAATCACAACACAAAAAAGAAAAAAAGAAAGGAAAA
GAATAGCAGAGGCCATGGCGATAGCAGCGGCAGCTGTCATCGTCCCATTG
GGCCTTCTCTTCTTCATTTCAGGCCTCGTTGTCAATCTCATTCAGGCAGT
TTGCTTTGTGACTATTCGCCCTCTATCGAAGAACACGTACAGGAGAATCA
ATAGATGGGTAGCGGAATTGTTATGGCTGGAACTTGTATGGATAGTTGAT
TGGTGGGCTGGAGTTAAGATCAAACTTTTCGTAGACCGTGAAACGTATCG
ATTAATGGGTAAAGAAACATGCACTTGTTGTTTCCAATCACAAAAGTGAC
ATTGACTGGGCTTGTTGGGTGGGTTTTGGCTCAGCGGTCAGGTTGTCCTG
GTAACACATTGGGCGGTTATGAAAAAATCCTCAAAATTTCTTCCGGGCAA
AGGTGGGGCAAGGGGGGTTTTCGGAAAAACCCCTTTCGGGAAAAAAAACC
GGGGCAAAAGGAAGGAAAGCCCCTTAAAAGTCGAGGTCCCCCACGGTCAA
AAAAAAATAATCCTCAACCCCTTTTGGGTTAAGCTTCCTTTTGGGAAGAG
GGAATCCCATTTTTAACCGGGGGAAAAACCTTTTTACCCGTCCCAGGGAA
AAAGGGTGGCTTTCCAAGGGGAATGGGGCATTTCCCCCAAAAAAGGTGGT
TTTAATTTTCCCCCTCCCAACAAAGGGGGGTTTTTTTTTTTCTAACACAA
GGGGGAGGTCAAAAAAAGGCGGCCCCCTC
back to top