EY727265

Overview
NameEY727265
Unique NameEY727265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727265 vs. ExPASy Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.306e-24
Identity = 76/159 (47.80%), Postives = 94/159 (59.12%), Query Frame = 3
Query:  390 PTKSHLGFFNNQRQLAVFYNKRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGTTEPPKGRQPGTQHSHQGHQHWGLA*MNITRLDRTGKKEKGGTCHESQKPPIFDLMNGQGQEVKNKRDVGEKAPIR*WAPGRLETP 866
            PT SHLGF N ++QL  F+  +          R C VITC AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGG  EPP+G  P + ++        +   +   LDRTG+KEKG T  + +    FDLM  Q + +K  + V  + PI     G L+ P
Sbjct:    9 PTTSHLGF-NQKKQL--FFCNKSAYKRVSFSSRPC-VITCLAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPRGGNPDS-NTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRAND-FDLMYEQVKALKEGKAV--EKPIYNHVTGLLDAP 159          
BLAST of EY727265 vs. ExPASy Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 71/167 (42.51%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  375 CSLYS-PTKSHLGFFNNQRQLAVFYN--KRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGTTEPPKGRQPGTQHSHQGHQHWGLA*MNITRLDRTGKKEKGGTCHESQKPPIFDLMNGQGQEVKNKRDVGEKAPIR*WAPGRLETP 866
            C++Y+ PT +HLG   NQ    VF+N  +           R   VITCS    QTIVIGLAADSGCGKSTFMRRLTSVFGG  EPPKG  P + ++        +   +   LDR G+K +  T  +  K   FDLM  Q + +K  + V +  PI     G L+ P
Sbjct:    4 CTVYTIPTTTHLGSSFNQNNKQVFFNYKRSSSSNNTLFTTRPSYVITCS--QQQTIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDS-NTLISDTTTVICLDDFHSLDRNGRKVEKVTALD-PKANDFDLMYEQVKALKEGKAVDK--PIYNHVSGLLDPP 164          
BLAST of EY727265 vs. ExPASy Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.752e-17
Identity = 70/176 (39.77%), Postives = 90/176 (51.14%), Query Frame = 3
Query:  360 SLNSPCSLYSPTKSHLGFFNNQRQLAVFYNKRXXXXXXXXKQRGCLVITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGTTEPPKGRQPGTQHSHQGHQHWGLA*MNITRLDRTGKKEKGGTCHESQKPPIFDLMNGQGQEVKNKRDVGEKAPIR*WAPGRLE-----TPPK 872
            SL SPC+    T  + GF  NQ    +F+  R               ++C+    Q IVIGLAADSGCGKSTFMRRLTSVFGG  EPPKG  P + ++        +   +   LDRTG+KEKG T  +  K   FDLM  Q + +K  + +  + PI     G L+      PPK
Sbjct:   11 SLRSPCT----TIPNSGFRQNQ---VIFFTTRSSRRSNTRHGARTFQVSCAV--EQPIVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDS-NTLISDTTTVICLDDYHSLDRTGRKEKGVTALD-PKANDFDLMYEQVKAIKEGKAI--EKPIYNHVTGLLDPAELIQPPK 173          
BLAST of EY727265 vs. ExPASy Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  498 VITCSAGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGTTEPPKGRQPGTQHSHQGHQHWGLA*MNITRLDRTGKKEKGGTCHESQKPPIFDLMNGQGQEVKNKRDVGEKAPIR*WAPGRLETP 866
            +ITC+    +TIVIGLAADSGCGKSTFMRRLTSVFGG  +PPKG  P + ++        +   +   LDR G+KE+  T  + +    FDLM  Q + +KN   +  + PI     G L+ P
Sbjct:   43 LITCA---QETIVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDS-NTLISDTTTVICLDDYHSLDRYGRKEQKVTALDPRAND-FDLMYEQVKALKN--GIAVEKPIYNHVTGLLDPP 158          
BLAST of EY727265 vs. ExPASy Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.420e-13
Identity = 51/122 (41.80%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  513 AGDSQTIVIGLAADSGCGKSTFMRRLTSVFGGTTEPPKGRQPGTQHSHQGHQHWGLA*MNITRLDRTGKKEKGGT--CHESQKPPIFDLMNGQGQEVKNKRDVGEKAPIR*WAPGRLETPPK 872
            A   +T+VIGLAADSGCGKSTFMRR+TS+FGG  +PP G  P + ++        +   +   LDR G+K KG T    E+Q    FDLM  Q + +K  + V +  PI     G ++ P K
Sbjct:   31 ADKDKTVVIGLAADSGCGKSTFMRRMTSIFGGVPKPPAGGNPDS-NTLISDMTTVICLDDYHCLDRNGRKVKGVTALAPEAQN---FDLMYNQVKALKEGKSVDK--PIYNHVSGLIDAPEK 146          
The following BLAST results are available for this feature:
BLAST of EY727265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KPPR_MESCR4.306e-2447.80Phosphoribulokinase, chloroplastic OS=Mesembryanth... [more]
KPPR_SPIOL3.193e-1942.51Phosphoribulokinase, chloroplastic OS=Spinacia ole... [more]
KPPR_WHEAT1.752e-1739.77Phosphoribulokinase, chloroplastic OS=Triticum aes... [more]
KPPR_ARATH4.040e-1443.90Phosphoribulokinase, chloroplastic OS=Arabidopsis ... [more]
KPPR_CHLRE3.420e-1341.80Phosphoribulokinase, chloroplastic OS=Chlamydomona... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-068-B06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727265 ID=EY727265; Name=EY727265; organism=Citrus sinensis; type=EST; length=876bp
CTTTTCTCTCCTTTTAACATCACCTCCAAAATTTGTCCAAACCAAAGGGT
ACTCACAGAAACCCATAAAACTAAAACAAATAACACATCACTCTTCCATG
ACAGCAAGTAAAACTGCTTGCTTTCCAAACTGCCATCTGTTTTCTTTCAT
CCCATGATTTTTGTCCTTTCAATTATATATACTTGTGCTCCAAAATTTTC
CTCTTAAAAATCTAAATAAGATTCCAAAAGGTATCCCATCTCATCATTTT
CATGTCTCATTTCAGAATTTAGCTGAAAGAATCCTAAAACGTTCATTTCT
GCTCTAGCAGCAGCATCCCTCACCGAGCCAAAAAAAAAAAAAGAAAGAAA
ATGGCCATTTCCCTCAACTCACCATGCTCTCTTTACTCGCCAACAAAATC
CCACTTGGGTTTTTTCAACAACCAAAGACAACTAGCGGTTTTTTACAACA
AGAGAAGCAGCAGCAGCAGCATCAGCAGCAAGCAGAGAGGATGTCTTGTG
ATAACATGCTCAGCAGGTGACTCACAGACAATTGTGATTGGTCTGGCGGC
AGACTCGGGGTGTGGGAAGAGCACGTTCATGAGGAGACTAACAAGCGTCT
TTGGGGGAACAACAGAGCCACCAAAAGGGCGGCAACCCGGGACTCAACAC
TCTCATCAGGGACACCAACACTGGGGATTGGCCTAGATGAATATCACTCG
CCTTGACCGAACTGGGAAAAAAGAAAAGGGTGGCACCTGCCATGAAAGCC
AGAAGCCACCAATTTTTGATCTTATGAATGGACAAGGTCAAGAGGTAAAA
AACAAGAGAGACGTAGGAGAAAAAGCCCCGATACGATAATGGGCACCGGG
TCGCTTGGAAACCCCGCCGAAGTGAA
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