FC922186

Overview
NameFC922186
Unique NameFC922186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922186 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 71/143 (49.65%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    6 IRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASD 434
            +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNPYP  S+ K +D
Sbjct:   41 VRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYPT-SDFKKTD 172          
BLAST of FC922186 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 54/130 (41.54%), Postives = 72/130 (55.38%), Query Frame = 3
Query:   51 LAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPY-PVQSEAKASDT 437
            + P+QLTI +GG   VFD IPA+KV+EI+ IAA++          T+  N  + +P L R+ S  S AS +A              C   A++P+ARR SLQRFFEKRR R V   PY    SEA  ++T
Sbjct:  127 ILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAAAAKA--------TETINLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEADKNET 233          
BLAST of FC922186 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 53/132 (40.15%), Postives = 72/132 (54.55%), Query Frame = 3
Query:   66 LTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPR--AQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEAKASDTKAQTPA 455
            LTIFYGG+V VFD   A+K +E++ +A   +  + T      N N  A S        + S+ + + SP   A   P+Q N    L  ELP+ARR SL RF EKR+DR+ SK PY +   A+AS +K   PA
Sbjct:  120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYS-----QKEIASSPNPVCSPAKTAAQEPIQPNP-ASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEAS-SKPTNPA 244          
BLAST of FC922186 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 47/123 (38.21%), Postives = 63/123 (51.22%), Query Frame = 3
Query:   60 TQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVT--NTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQSEA 422
            +QLTIF+GGKV V++  P DK +EIM +A  +  VT  N      D  N   SS VL   P L          + Q    ++N + +      +ARR SL RFF KR+DR V++ PY V   A
Sbjct:   97 SQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVL---PDLNEPTDNNHLTKEQQQQQEQNQIVE-----RIARRASLHRFFAKRKDRAVARAPYQVNQNA 211          
The following BLAST results are available for this feature:
BLAST of FC922186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TIF3B_ARATH1.136e-2949.65Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH4.633e-1541.54Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
TI10B_ARATH1.761e-1440.15Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH1.395e-1138.21Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM3CE04RM1 SLH Citrus sinensis cDNA clone KN0AAM3CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922186 ID=FC922186; Name=FC922186; organism=Citrus sinensis; type=EST; length=731bp
ACACCATCAGGGCCACGGCAATCCCAACTTCTGGAGTGAATGCCACGGAC
CTTGCTCCAACTCAGCTTACGATCTTCTATGGTGGAAAAGTGTGTGTATT
TGATGCAATTCCGGCAGACAAGGTTCGTGAAATTATGCTTATTGCTGCCT
CTTCTGCCACTGTTACTAACACAAGTGACATGAAGACGGACAATACCAAC
TGTCCTGCCTCTTCACCAGTTCTAACAAGGTCTCCTTCACTGCAAAGCAC
TGCAAGTGCTTTGGCATCACCTCGGGCACAATCATATCCTGTTCAAAGGA
ATCTCCTCTGTAAATTGCAAGCTGAACTACCAATGGCAAGGAGGCATTCC
CTTCAGCGATTTTTCGAGAAGCGACGTGACAGGCTGGTGAGCAAGAATCC
ATATCCTGTTCAATCAGAGGCAAAAGCTTCTGACACCAAAGCTCAGACTC
CTGCAGAGGCAGGTTGCTTTGAGAAAACTTCCGTGCCTCAGGAAGAATTG
CAACCTAAGGCTGCAGCCAATGTTGCATAAATTATCTATCTTGCTTAGAT
GTTTGTAGTAAATAATCCAGAACTATCTACTTAGATAAACTAGACATTGC
TGTATTGTTTGTGTGAAAAACCCAAGCGCACAGGGTGTGATGATGTTTGA
ATTGCTTTTGGAATTTGTAGGAATGGCGTGTGTACAACTTCTCATTGTCA
GGGACCAAAAGAAAAGAAAAATTTCTTGATG
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