DR403414
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RH18_ARATH (DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana GN=RH18 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.804e-31 Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = -1 Query: 44 SNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASS-ARKPHQVQNI 310 +N N+ALTETRFSDL+P LS ++EAL ++ FEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRR++S KPHQV + Sbjct: 5 ANINKALTETRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGV 94
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RH18_ORYSJ (DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica GN=Os01g0164500 PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 3.892e-26 Identity = 62/85 (72.94%), Postives = 68/85 (80.00%), Query Frame = -1 Query: 44 RALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQVQNI 298 RALTE RFS+L PALS V++AL GF CTPVQAA IPLL S+KDVAVDAATGSGKTLAFVVP+VEILRR S KPH+V I Sbjct: 16 RALTEQRFSELSPALSPEVVKALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATGSGKTLAFVVPVVEILRRRPSPPKPHEVLGI 100
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RH49_ARATH (DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana GN=RH49 PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 5.084e-26 Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = -1 Query: 44 MESNPNRALTET--RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASS-ARKPHQVQNI 316 M+S+P + +T+ RFS+LKP LSE ++EAL +GFE CTPVQA TIP LCS+KDV VDAATGSGKTLAF++P +EI+RR++S KPHQV + Sbjct: 1 MDSSPPKTITKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGV 94
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: RH55_ARATH (DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana GN=RH55 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.523e-25 Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = -1 Query: 44 MESNPNRALTET---RFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASS-ARKPHQVQNI 316 M+S+P + E RFS+LKP LSE ++EAL +GFE CTPVQA TIP LCS+KDV VDAATGSGKTLAF++P +EI+RR++S KPHQV + Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGV 95
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: DDX55_CHICK (ATP-dependent RNA helicase DDX55 OS=Gallus gallus GN=DDX55 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16 Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = -1 Query: 53 ALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 295 A+TE +S L ALS VL AL + GF+ TPVQ+ATIPL S KDVA +A TGSGKTLAFV+P++EIL R K QV Sbjct: 3 AVTEGGWSSLPVALSPGVLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQV 83
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_ASPCL (ATP-dependent rRNA helicase spb4 OS=Aspergillus clavatus GN=spb4 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.273e-15 Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = -1 Query: 53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316 M NP + + + + P LSE VLEA++ GF TPVQA+ IPL ++KDV V+A TGSGKTL+F++P+VE L R K H + Sbjct: 1 MAPNPPKGTSSRAWDAVTPPLSEWVLEAMSSMGFARMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLLPIVEKLLRLEEPIKKHHI 88
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_AJECN (ATP-dependent rRNA helicase SPB4 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SPB4 PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 6.887e-15 Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = -1 Query: 53 LKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 268 L P LSE +L+A++ GF TPVQA+TIPL ++KDV V+A TGSGKTLAF++P+VE L R S K H + Sbjct: 24 LTPPLSEWILDAISAMGFSRMTPVQASTIPLFMAHKDVVVEAVTGSGKTLAFLIPVVERLLRLESPIKKHHI 95
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_NEOFI (ATP-dependent rRNA helicase spb4 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=spb4 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = -1 Query: 53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316 M P + + + PALSE VLEA++ GF TPVQA+ IPL ++KDV V+A TGSGKTL+F++P+VE L R K H + Sbjct: 1 MAPKPPSGTSSRAWDAVTPALSEWVLEAMSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIKKHHI 88
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_ASPOR (ATP-dependent rRNA helicase spb4 OS=Aspergillus oryzae GN=spb4 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14 Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = -1 Query: 53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316 M P + + + P+LSE VLEA++ GF TPVQA+ IPL ++KDV V+A TGSGKTL+F++P+VE L R K H V Sbjct: 1 MAPKPPAGTSSRAWDGVSPSLSEWVLEAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPIVEKLLRLEEPIKKHHV 88
BLAST of DR403414 vs. ExPASy Swiss-Prot
Match: SPB4_ASPNC (ATP-dependent rRNA helicase spb4 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=spb4 PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14 Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = -1 Query: 53 MESNPNRALTETRFSDLKPALSEPVLEALAEAGFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRASSARKPHQV 316 M P + + + PALSE VL+A+A GF TPVQA+ IPL ++KDV V+A TGSGKTL+F++P+VE L R K H V Sbjct: 1 MAPKPPPGTSARAWDGVTPALSEWVLDAVASMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPLKKHHV 88 The following BLAST results are available for this feature:
BLAST of DR403414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
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Sequences
The
following sequences are available for this feature:
EST sequence >DR403414 ID=DR403414; Name=DR403414; organism=Citrus sinensis; type=EST; length=589bpback to top |