CN188876

Overview
NameCN188876
Unique NameCN188876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188876 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.523e-29
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = -1
Query:  304 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELIL 498
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGV PELIL
Sbjct:  281 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of CN188876 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.092e-27
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = -1
Query:  304 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELIL 498
            RE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+ PELIL
Sbjct:  277 REIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of CN188876 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.650e-25
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = -1
Query:  304 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELIL 498
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  274 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of CN188876 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.747e-23
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = -1
Query:  304 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVPPELIL 498
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  280 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of CN188876 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.057e-22
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = -1
Query:  337 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 498
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  277 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of CN188876 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  328 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 498
            RE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  279 REILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CN188876 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  370 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 498
            RE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  271 REIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
The following BLAST results are available for this feature:
BLAST of CN188876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
THI4_CITSI1.523e-2998.46Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.092e-2790.77Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH8.650e-2584.62Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE4.747e-2381.54Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.057e-2294.44Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_UROFA3.770e-1256.14Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_FUSSH7.109e-1172.09Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188876 ID=CN188876; Name=CN188876; organism=Citrus sinensis; type=EST; length=498bp
TTTTTTTTTTTTTTTTTCTACCCTTAAAAACCCAACTGCAAATTCACCTC
CGAAAAACTCTCCTCTGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAA
AGGTTCCATGATGGACCGGAAACAAACACTTTATTCCCAAAACCTCACAA
CATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAATACAA
CTACTTTTTTGCCAGAGTTTATTTGCATGCACACCGCTGATGAGTGATGA
TGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAAAATCAGCTGC
AACTAAAATCAGCTCAGGGGGAACCCCTCCCACATATGTACCGTCTAATG
CATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCC
GAAATCATCATTGCTCCAAAAGTTGGCCCCATTCGAGGAGCACCATCAAT
CTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCCT
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