CV887331

Overview
NameCV887331
Unique NameCV887331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887331 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.076e-44
Identity = 90/115 (78.26%), Postives = 102/115 (88.70%), Query Frame = -1
Query:   88 RMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 432
            +MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:   82 KMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CV887331 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.326e-37
Identity = 70/108 (64.81%), Postives = 95/108 (87.96%), Query Frame = -1
Query:   88 EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 411
            ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:   90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CV887331 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.365e-31
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = -1
Query:   88 EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 411
            +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  120 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CV887331 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.846e-29
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = -1
Query:   88 RMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 432
            + ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   55 KASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CV887331 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.717e-29
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = -1
Query:  100 RMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 432
            + ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   50 KASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CV887331 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.240e-16
Identity = 55/107 (51.40%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  100 SEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 414
            +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   68 TEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CV887331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.076e-4478.26Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL6.326e-3764.81Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.365e-3162.73High molecular mass early light-inducible protein ... [more]
ELI9_HORVU2.846e-2956.03Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.717e-2957.14Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA1.240e-1651.40Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030F08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887331 ID=CV887331; Name=CV887331; organism=Citrus sinensis; type=EST; length=585bp
AGAAAAGAGATTTAATTACAGTAGGATCTCATACATTAATTAGTTAAAAA
AAATACAGATCTACAGATCTAAACAAAATTAAGCTTAAACAAGGGTGCCA
CCCTTAACAAACTCGGTGAAAGCCAAAGCAACAAGGCCCAGCATAGCAAA
CCTCCCATTCCACAACTCAGCATCCGAAGTCATGAACCCATCCGATTTAG
ACTCCACGCTGACACCTTTAAACAAAGGAACCAGGGACGCAACCGTGAGC
AAAACACTGGTCCCCAAGAACCAGGCAACCCCACCGTCTGATAACTGGGC
AAACACATCCTGACCCTTGGATATCTCCACCCCCAATGCAGCCACGAACC
CAATCATCGCAAGCCTCCCGTTTATCCTCTCCGGTGCCGGCCCGCTGAAC
GCAAACACCTCAGAGAACCCCGTGCTCATCCGCGGCTTCTTTGGTGGCTG
AGGCTCAGCTTTCTTTTTGAGTTTTTATTTTACTTTTCCGAGTCAACTTT
CTCTTGTTTTATCTGATTCTCCCTGTGACACTAGATATTGTTACTTTTTA
ATTCAATGTTTTGCTCCNNAAAAAAAAAAAAAAAA
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