EY678282

Overview
NameEY678282
Unique NameEY678282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY678282 vs. ExPASy Swiss-Prot
Match: GALE2_CYATE (UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.251e-23
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   61 SEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAG 213
            S + +LVTGGAG+IG+H  LQLL GGFK V++DNL NS   A+ RVK+LAG
Sbjct:    2 SSQTVLVTGGAGYIGSHTVLQLLLGGFKAVVVDNLDNSSETAIHRVKELAG 52          

HSP 2 Score: 60.4622 bits (145), Expect = 5.251e-23
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 2
Query:  233 LEFHVGDLRNKDDLDKLFSSQKFEAVIHFWCP*GCGRKCSTSLSVILNNKFELVPSICNQAMAK*NCKKLGFSSSTTIFGQPEK 484
            L FH  DLR++D L+K+FSS KF++VIHF      G      L    NN    +  +  + MA   CKKL FSSS T++G P++
Sbjct:   58 LSFHKLDLRDRDALEKIFSSTKFDSVIHFAGLKAVGESVQKPLLYYDNNLIGTI--VLFEVMAAHGCKKLVFSSSATVYGLPKE 139          
BLAST of EY678282 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 2.229e-20
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   67 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLA 210
            +N+LV+GGAG+IG+H  LQLL GG+ VV++DNL NS   ++ RVK LA
Sbjct:    4 RNVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLA 51          

HSP 2 Score: 58.9214 bits (141), Expect = 2.229e-20
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 2
Query:  227 KKLEFHVGDLRNKDDLDKLFSSQKFEAVIHFWCP*GCGRKCSTSLSVILNNKFELVPSICNQAMAK*NCKKLGFSSSTTIFGQPEK 484
            ++L FH  DLR++  L+K+FS  KF+AVIHF      G      L    NN    +  +  + MA+  CK L FSSS T++G P++
Sbjct:   56 ERLSFHQVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLL--EVMAQHGCKNLVFSSSATVYGSPKE 139          
BLAST of EY678282 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.230e-20
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   67 KNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAG 213
            K++LVTGGAG+IG+H  LQLL+GG+  V++DN  NS   ++ RVK LAG
Sbjct:    3 KSVLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAG 51          

HSP 2 Score: 57.3806 bits (137), Expect = 2.230e-20
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 2
Query:  230 KLEFHVGDLRNKDDLDKLFSSQKFEAVIHFWCP*GCGRKCSTSLSVILNNKFELVPSICNQAMAK*NCKKLGFSSSTTIFGQPEK 484
            +L FH  DLR++  L+K+FS  KF+AVIHF      G      L    NN    V  +  + MA+  CK L FSSS T++G P++
Sbjct:   56 RLSFHQVDLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLL--EVMAQYGCKNLVFSSSATVYGWPKE 138          
BLAST of EY678282 vs. ExPASy Swiss-Prot
Match: GALE1_ARATH (UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.199e-19
Identity = 74/198 (37.37%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   64 EKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKEARVPCG*S*EQG*LG*AFF*SKI*SCDPFLVPLRLWQKVFNIPFRYFE**I*IGTINL*PGHGKIKL*KVGIFLLHHHLWTA*KKLPCVEEFPVWWL*ILMEQTNQRWQKNLFL-----IFKRQTP*WKKSLLRDFIPGWSH 642
            E+NILVTGGAGFIGTH  +QLL+ GFKV +IDN  NSV EAVDRV++L GP+L+K+     G    +G +   F   +  +   F     + + V N P RYF+  + +GTINL     K    K+ +F     ++   +K+PC+E+F        ++  N   +  LFL       ++  P W+  LLR F P  +H
Sbjct:    6 EQNILVTGGAGFIGTHTVVQLLKDGFKVSIIDNFDNSVIEAVDRVRELVGPDLSKKLDFNLGDLRNKGDIEKLFSKQRFDAVIHFAGLKAVGESVEN-PRRYFDNNL-VGTINLYETMAKYNC-KMMVFSSSATVYGQPEKIPCMEDFE-------LKAMNPYGRTKLFLEEIARDIQKAEPEWRIILLRYFNPVGAH 193          
BLAST of EY678282 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 8.839e-19
Identity = 27/50 (54.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   73 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPEL 222
            ILVTGGAG+IG+H  ++LL  G+++V++DNL NS  EA++RVK++ G +L
Sbjct:    3 ILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITGKDL 52          

HSP 2 Score: 51.6026 bits (122), Expect = 8.839e-19
Identity = 34/97 (35.05%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  227 KKLEFHVGDLRNKDDLDKLFSSQKFEAVIHFWCP*GCGRKCSTSLSVILNNKFELVPSICNQAMAK*NCKKLGFSSSTTIFGQPEKNYLVLKNFPYG 517
            K L F+  DL +++ +D +F+  + EAVIHF      G   +  L    NN       I  +AM K   KK+ FSSS T++G PE +  + ++FP G
Sbjct:   50 KDLTFYEADLLDREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTF--ILCEAMEKYGVKKIVFSSSATVYGVPETS-PITEDFPLG 143          
BLAST of EY678282 vs. ExPASy Swiss-Prot
Match: YGRE_SCHPO (Uncharacterized protein C365.14c OS=Schizosaccharomyces pombe GN=SPBC365.14c PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 5.889e-17
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   64 EKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPEL 222
            E  +LVTGGAG+IG+H  + LL+ G+ VV++DNL NS  EAV R++ L G ++
Sbjct:    6 EGTVLVTGGAGYIGSHTCVVLLEKGYDVVIVDNLCNSRVEAVHRIEKLTGKKV 58          

HSP 2 Score: 50.8322 bits (120), Expect = 5.889e-17
Identity = 32/86 (37.21%), Postives = 44/86 (51.16%), Query Frame = 2
Query:  227 KKLEFHVGDLRNKDDLDKLFSSQKFEAVIHFWCP*GCGRKCSTSLSVILNNKFELVPSICNQAMAK*NCKKLGFSSSTTIFGQPEK 484
            KK+ FH  DL ++  LDK+F++Q   AVIHF      G      LS   NN    +  I  + M K N +   FSSS T++G P +
Sbjct:   56 KKVIFHQVDLLDEPALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKNNISGTINLI--ECMKKYNVRDFVFSSSATVYGDPTR 139          
BLAST of EY678282 vs. ExPASy Swiss-Prot
Match: GALE1_PEA (UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.764e-16
Identity = 71/201 (35.32%), Postives = 102/201 (50.75%), Query Frame = 1
Query:   55 MASEKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKEARVPCG*S*EQG*LG*AFF*SKI*SCDPFLVPLRLWQKVFNIPFRYFE**I*IGTINL*PGHGKIKL*KVGIFLLHHHLWTA*KKLPCVEEFPVWWL*ILMEQTNQRWQKNLFL-----IFKRQTP*WKKSLLRDFIPGWSH 642
            +AS + ILVTG AGFIGTH  +QLL  GF V +IDN  NSV EAV+RV+++ G  L++      G    +  L   F  SK  +   F     + + V N P RYF+  + +GTINL     K    K+ +F     ++   +K+PCVE+F        ++  N   +  LFL       ++  P W+  LLR F P  +H
Sbjct:    2 VASSQKILVTGSAGFIGTHTVVQLLNNGFNVSIIDNFDNSVMEAVERVREVVGSNLSQNLEFTLGDLRNKDDLEKLFSKSKFDAVIHFAGLKAVGESVEN-PRRYFDNNL-VGTINLYEVMAKHNCKKM-VFSSSATVYGQPEKIPCVEDFK-------LQAMNPYGRTKLFLEEIARDIQKAEPEWRIVLLRYFNPVGAH 192          
BLAST of EY678282 vs. ExPASy Swiss-Prot
Match: GALE_DICDI (UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.371e-15
Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   64 EKNILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAGPEL 222
            +  I+VTGGAG+IG+H  ++L++ G+  V++DNL NS  EA+ RV+ + G E+
Sbjct:    5 DDRIMVTGGAGYIGSHTVIELIEAGYTPVIVDNLSNSSLEAIKRVESITGKEI 57          

HSP 2 Score: 45.4394 bits (106), Expect = 1.371e-15
Identity = 31/95 (32.63%), Postives = 46/95 (48.42%), Query Frame = 2
Query:  227 KKLEFHVGDLRNKDDLDKLFSSQKFEAVIHFWCP*GCGRKCSTSLSVILNNKFELVPSICNQAMAK*NCKKLGFSSSTTIFGQPEKNYLVLKNFP 511
            K++EFH  D+ N+  LD++F +    +VIHF      G      L    NN    +  +    M K   KKL FSSS T++G P     + ++FP
Sbjct:   55 KEIEFHHVDIMNEKALDEIFETGNIRSVIHFAGLKAVGESNKLPLKYYNNNIAGTLTLL--NLMDKHRVKKLVFSSSATVYGDPH-TVPITEDFP 146          
BLAST of EY678282 vs. ExPASy Swiss-Prot
Match: GALE_YERPE (UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.010e-15
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   73 ILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAG--PEL 222
            +LVTGG+G+IG+H  +QL++ G+K V++DNL NS    + R+  L G  PEL
Sbjct:    3 VLVTGGSGYIGSHTCVQLIEAGYKPVILDNLCNSKSSVLARIHSLTGYTPEL 54          

HSP 2 Score: 48.9062 bits (115), Expect = 3.010e-15
Identity = 34/103 (33.01%), Postives = 53/103 (51.46%), Query Frame = 2
Query:  236 EFHVGDLRNKDDLDKLFSSQKFEAVIHFWCP*GCGRKCSTSLSVILNNKFELVPSICNQAMAK*NCKKLGFSSSTTIFG-QPEKNYLVLKNFPYGGYESLWNK 541
            E + GD+R++  LD +F++    AVIHF      G   +  L    NN F  +  +  +AM     K L FSSS T++G QP+  Y  +++FP G   S + +
Sbjct:   53 ELYAGDIRDRTLLDSIFAAHPIHAVIHFAGLKAVGESVNRPLEYYNNNVFGTL--VLLEAMRAAQVKNLIFSSSATVYGDQPQIPY--VESFPTGSPSSPYGR 151          
BLAST of EY678282 vs. ExPASy Swiss-Prot
Match: GALE_YEREN (UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 6.606e-15
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   70 NILVTGGAGFIGTHCALQLLQGGFKVVLIDNLHNSVPEAVDRVKDLAG 213
            +IL+TGGAG+IG+H  L LL+ G  VV++DNL NS  E++ RV  + G
Sbjct:    2 SILITGGAGYIGSHTVLTLLEQGRNVVVLDNLINSSAESLARVSKICG 49          

HSP 2 Score: 48.9062 bits (115), Expect = 6.606e-15
Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 2
Query:  227 KKLEFHVGDLRNKDDLDKLFSSQKFEAVIHFWCP*GCGRKCSTSLSVILNNKFELVPSICNQAMAK*NCKKLGFSSSTTIFGQPE 481
            +K  F+ GD+ ++  L  +FSS K ++VIHF      G      +    NN    +  +    +A  N KKL FSSS T++G+PE
Sbjct:   50 RKPNFYHGDILDRSCLKLIFSSHKIDSVIHFAGLKSVGESVEKPIEYYQNNVVGSITLLEEMCLA--NVKKLIFSSSATVYGEPE 132          
The following BLAST results are available for this feature:
BLAST of EY678282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GALE2_CYATE5.251e-2362.75UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetrag... [more]
GALE2_ARATH2.229e-2058.33UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GALE3_ARATH2.230e-2057.14UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]
GALE1_ARATH1.199e-1937.37UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana ... [more]
GALE_BACSU8.839e-1954.00UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
YGRE_SCHPO5.889e-1750.94Uncharacterized protein C365.14c OS=Schizosaccharo... [more]
GALE1_PEA2.764e-1635.32UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE P... [more]
GALE_DICDI1.371e-1545.28UDP-glucose 4-epimerase OS=Dictyostelium discoideu... [more]
GALE_YERPE3.010e-1548.08UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE... [more]
GALE_YEREN6.606e-1552.08UDP-glucose 4-epimerase OS=Yersinia enterocolitica... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-046-D12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY678282 ID=EY678282; Name=EY678282; organism=Citrus sinensis; type=EST; length=927bp
TATAATCGTCGCTCTCTCCTTCTTTCCCCTTCTCCTCCAATCCTTTGCCT
TGCAATGGCGTCAGAGAAAAATATCCTGGTGACCGGTGGAGCTGGCTTTA
TTGGAACGCACTGTGCGCTTCAGCTTCTACAGGGAGGGTTTAAGGTGGTG
CTTATCGATAATTTACATAACTCTGTCCCGGAAGCTGTTGATAGAGTTAA
GGACTTGGCGGGTCCTGAGCTCGCTAAAGAAGCTCGAGTTCCATGTGGGT
GATCTTAGGAACAAGGATGACTTGGATAAGCTTTTTTCTAGTCAAAAATT
TGAAGCTGTGATCCATTTTTGGTGCCCTTAAGGCTGTGGCAGAAAGTGTT
CAACATCCCTTTCCGTTATTTTGAATAATAAATTTGAATTGGTACCATCA
ATCTGTAACCAGGCCATGGCAAAATAAAACTGTAAAAAGTTGGGATTTTC
CTCCTCCACCACCATCTTTGGACAGCCTGAAAAAAATTACCTTGTGTTGA
AGAATTTCCCGTATGGTGGTTATGAATCCTTATGGAACAAACAAATCAAA
GGTGGCAGAAAAATTTGTTTTTGATTTTCAAAAGGCAAACCCCATAATGG
AAAAAATCTTTACTTAGGGACTTCATTCCGGGTTGGAGCCATAAAAGAGG
GAAAAACAGGTAAAAAATAAAAGGTAAACCAAGAAAACCAGAGGCAATAA
AAAAAGAAGAGCACCGAGGGGGAAAAAACATAGAGTTAAAATGTAAAGGG
GCAAAATTCACGAAGAAAAAGCAGATAAGAAAGAGGCAGAAAAAAATATA
ATAGAAAAGGCCTGGGAGTAAGTGAAAGTAAAAAGAGTTCAAAATAAAAA
TTTTTAGGGAAAAAATAAAATGAGGAAACGACAAATCAAAACGGTAGAGA
AAGAAATGAGGAAAACTTACTGTAACA
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