FC871373

Overview
NameFC871373
Unique NameFC871373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871373 vs. ExPASy Swiss-Prot
Match: U195A_ARATH (UPF0195 protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.878e-36
Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 2
Query:   80 DPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 445
            D LEI+D +RDI+DPEHP             + VD++   + +TFTPT++HCSMA VIGLC+RVKL    P  +K+DI+VAPGSHA E+++NKQLNDKER+AAALENPNL ++VDECL S E
Sbjct:   36 DQLEIFDHIRDIKDPEHPNTLEDLRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKIDIRVAPGSHATEDALNKQLNDKERVAAALENPNLVEMVDECLPSEE 157          
BLAST of FC871373 vs. ExPASy Swiss-Prot
Match: FA96B_MOUSE (UPF0195 protein FAM96B OS=Mus musculus GN=Fam96b PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.768e-28
Identity = 62/136 (45.59%), Postives = 81/136 (59.56%), Query Frame = 2
Query:   29 GRWPRTEGTHSHS-DDCADPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 433
            G  P T G       D  D  EI+D +R I DPEHP             I V +    + + FTPTI HCSMA +IGL ++VKL    P  FK+D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL
Sbjct:   24 GERPVTAGEEDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCL 159          
BLAST of FC871373 vs. ExPASy Swiss-Prot
Match: FA96B_HUMAN (UPF0195 protein FAM96B OS=Homo sapiens GN=FAM96B PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.921e-28
Identity = 61/136 (44.85%), Postives = 81/136 (59.56%), Query Frame = 2
Query:   29 GRWPRTEGTHSHS-DDCADPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 433
            G  P T G       D  D  EI+D +R I DPEHP             + V +    + + FTPTI HCSMA +IGL ++VKL    P  FK+D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL
Sbjct:   24 GERPVTAGEEDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCL 159          
BLAST of FC871373 vs. ExPASy Swiss-Prot
Match: FA96A_HUMAN (UPF0195 protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.394e-28
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 2
Query:   86 LEIYDFVRDIRDPEHPYXXXXXXXXXXXXITV---DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 433
            LE+YD +R IRDPE P             + V   +E+   ++I FTPT+ HCS+A +IGLCLRVKL+   P   KL+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   38 LEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of FC871373 vs. ExPASy Swiss-Prot
Match: U195A_DROME (UPF0195 protein CG7949 OS=Drosophila melanogaster GN=CG7949 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.096e-27
Identity = 57/121 (47.11%), Postives = 81/121 (66.94%), Query Frame = 2
Query:   71 DCADPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITVDEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 433
            D  D  EI+D +R+I DPEHP             I +++    + I+FTPTI HCSMA +IGL +RVKL    PP FK+ +++ PG+HA E +VNKQL DKER+AAALEN +L +++++C+
Sbjct:   32 DPFDKREIFDLIRNINDPEHPLTLEELHVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVTVEITPGTHASELAVNKQLADKERVAAALENNHLAEVINQCI 152          
BLAST of FC871373 vs. ExPASy Swiss-Prot
Match: FA96A_MOUSE (UPF0195 protein FAM96A OS=Mus musculus GN=Fam96a PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.870e-27
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 2
Query:   86 LEIYDFVRDIRDPEHPYXXXXXXXXXXXXITV---DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 433
            LE+YD +R IRDPE P             + V   +E    ++I FTPT+ HCS+A +IGLCLRVKL+   P   KL+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   38 LEVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIKFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of FC871373 vs. ExPASy Swiss-Prot
Match: FA96A_BOVIN (UPF0195 protein FAM96A OS=Bos taurus GN=FAM96A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.870e-27
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 2
Query:   86 LEIYDFVRDIRDPEHPYXXXXXXXXXXXXITV---DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 433
            LE+YD +R IRDPE P             + V   +E    ++I FTPT+ HCS+A +IGLCLRVKL+   P   KL+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   38 LEVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of FC871373 vs. ExPASy Swiss-Prot
Match: U195_CAEEL (UPF0195 protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.442e-27
Identity = 61/124 (49.19%), Postives = 78/124 (62.90%), Query Frame = 2
Query:   68 DDCADPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITV--DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 433
            +D  D  EI+D +RDI DPEHPY            I V  DE+   + + FTPTI HCSMA +IGL +RVKL     P  K+ + + PGSH+ EES+N+QL DKER+AAA+EN  L   V+ECL
Sbjct:   33 EDPIDSWEIFDLIRDINDPEHPYTLEQLNVVQEELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKVSVSITPGSHSTEESINRQLADKERVAAAMENQGLMHAVNECL 156          
BLAST of FC871373 vs. ExPASy Swiss-Prot
Match: YIVG_SCHPO (UPF0195 protein C144.16 OS=Schizosaccharomyces pombe GN=SPAC144.16 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.899e-25
Identity = 58/127 (45.67%), Postives = 75/127 (59.06%), Query Frame = 2
Query:   71 DCADPLEIYDFVRDIRDPEHPYXXXXXXXXXXXXITVDEKL---GRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC 442
            D  DP EIYD +  I DPEHP             I V + +     I +  TPTI HCSM  +IGLC+RV+L+   PP F +D+KV  G+HA E  VNKQLNDKER+AAA EN  L  +++  + +C
Sbjct:   52 DPIDPQEIYDLLAKINDPEHPLTLAQLSVVKLEDIEVVDNVEGDSYITVHITPTIPHCSMCTLIGLCIRVRLERCLPPRFHVDVKVKKGTHASESQVNKQLNDKERVAAACENEQLLSVLNGMMATC 178          
BLAST of FC871373 vs. ExPASy Swiss-Prot
Match: U195B_DROME (UPF0195 protein CG30152 OS=Drosophila melanogaster GN=CG30152 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.092e-25
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 2
Query:   92 IYDFVRDIRDPEHPYXXXXXXXXXXXXITV----DEKLGRILITFTPTIQHCSMAAVIGLCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 433
            IYD +R IRDPE P             I V       +  + I F PT+ HCS+A +IGLC+RVK++   P + KLDI +  G+H  EE +NKQ+NDKERIAAA+ENPNLR LV+ C+
Sbjct:   97 IYDLLRGIRDPEKPCTLEDLNVVYEDGIFVMPPTRSNVSVVRIEFNPTVPHCSLATLIGLCIRVKVERGLPHNIKLDIYIKKGAHQTEEEINKQINDKERIAAAMENPNLRDLVENCI 214          
The following BLAST results are available for this feature:
BLAST of FC871373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
U195A_ARATH2.878e-3658.20UPF0195 protein At1g68310 OS=Arabidopsis thaliana ... [more]
FA96B_MOUSE3.768e-2845.59UPF0195 protein FAM96B OS=Mus musculus GN=Fam96b P... [more]
FA96B_HUMAN4.921e-2844.85UPF0195 protein FAM96B OS=Homo sapiens GN=FAM96B P... [more]
FA96A_HUMAN8.394e-2848.74UPF0195 protein FAM96A OS=Homo sapiens GN=FAM96A P... [more]
U195A_DROME1.096e-2747.11UPF0195 protein CG7949 OS=Drosophila melanogaster ... [more]
FA96A_MOUSE1.870e-2748.74UPF0195 protein FAM96A OS=Mus musculus GN=Fam96a P... [more]
FA96A_BOVIN1.870e-2748.74UPF0195 protein FAM96A OS=Bos taurus GN=FAM96A PE=... [more]
U195_CAEEL2.442e-2749.19UPF0195 protein F45G2.10 OS=Caenorhabditis elegans... [more]
YIVG_SCHPO3.899e-2545.67UPF0195 protein C144.16 OS=Schizosaccharomyces pom... [more]
U195B_DROME5.092e-2548.31UPF0195 protein CG30152 OS=Drosophila melanogaster... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CD09FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CD09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871373 ID=FC871373; Name=FC871373; organism=Citrus sinensis; type=EST; length=642bp
CGGGGGACTAGCGTTTGGCTCCTTTAGAGGGAGGTGGCCCCGCACCGAAG
GGACCCACTCTCACTCCGACGACTGCGCTGATCCCCTCGAGATATATGAT
TTTGTGAGAGATATAAGAGATCCAGAGCATCCTTATTCTCTAGAGCAGCT
GAGCGTTCTATCTGAGGAATCGATCACTGTTGACGAGAAGCTTGGGCGTA
TTTTGATAACTTTCACTCCCACTATTCAGCATTGCAGTATGGCGGCGGTG
ATTGGTCTCTGCTTGAGGGTTAAACTGAAAGAATTTTTCCCTCCGCATTT
CAAGCTTGACATCAAAGTTGCTCCTGGATCCCATGCTGATGAAGAATCAG
TTAATAAGCAGTTGAATGATAAAGAAAGAATTGCAGCTGCTTTGGAGAAT
CCTAACCTTCGCCAACTTGTTGATGAGTGTCTCTATTCCTGTGAAATTTG
AGCAAGTGCACTCAACTGAGCAAAAATCACTGTACAGAGTAAACAGCAGC
AGTATTGGGGTGTATGTAATAAGAAATGTTGTTGTAAAATGAATTTGATG
TAATGACTCTACTGTACCTCTGTTGTGTGCCTCCTCCATTTTTGTTGGCT
TTATTGATCAATTTATGAATCCTTTTACAGACGCTAGAAACT
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