FC871180

Overview
NameFC871180
Unique NameFC871180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871180 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.964e-30
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 2
Query:  173 IAYAAGRAGGTMTGVLSATNENALEMFIDEKIGYLDIF*AEELT*DKHREYLLTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVPA 430
            +AYAAGRAGGTMTGVLSA NE A+EMFIDEKI YLDIF   ELT DKHR  L+TSPSLE+I+HYD WAREYAA +Q SSG  PV A
Sbjct:  392 LAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCDKHRNELVTSPSLEEIVHYDLWAREYAANVQLSSGARPVHA 477          
BLAST of FC871180 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.055e-30
Identity = 65/85 (76.47%), Postives = 71/85 (83.53%), Query Frame = 2
Query:  173 IAYAAGRAGGTMTGVLSATNENALEMFIDEKIGYLDIF*AEELT*DKHREYLLTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVP 427
            +AYAAGRAGGTMTGVLSA NE A+E+FIDEKIGYLDIF   ELT D HR  L+T PSLE+IIHYD WAREYAA LQ S+G SPVP
Sbjct:  388 LAYAAGRAGGTMTGVLSAANEKAVELFIDEKIGYLDIFKVVELTCDAHRNELVTRPSLEEIIHYDLWAREYAASLQPSTGLSPVP 472          
BLAST of FC871180 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.377e-27
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 2
Query:  173 IAYAAGRAGGTMTGVLSATNENALEMFIDEKIGYLDIF*AEELT*DKHREYLLTSPSLEDIIHYDAWAREYAAGLQFSSGRSP 421
            +AYAAGRAGGTMTGVLSA NE A+EMFIDEKIGYLDIF   ELT DKHR  +  SPSLE+I+HYD WAR+YAA +  S+G SP
Sbjct:  385 LAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHRSEMAVSPSLEEIVHYDQWARDYAATVLKSAGLSP 467          
BLAST of FC871180 vs. ExPASy Swiss-Prot
Match: DXR_PROMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.478e-13
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  173 IAYAAGRAGGTMTGVLSATNENALEMFIDEKIGYLDIF*AEELT*DKHREYLLTSPSLEDIIHYDAWAREYAAGLQFSSG--RSPVPA 430
            +AYAAGRAGGTM  VL+A NE A+  F++E+I +LDI    E   ++H+  L T P L+D++  DAWAR+ A   Q   G  R P+PA
Sbjct:  323 LAYAAGRAGGTMPAVLNAANEEAVAQFLEERIHFLDIPEVIEAACERHKPDLQTQPQLDDVLAVDAWARK-AVQEQVKRGTRRLPLPA 409          
BLAST of FC871180 vs. ExPASy Swiss-Prot
Match: DXR_ANASP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena sp. (strain PCC 7120) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.478e-13
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 2
Query:   65 LPAH*ALIFP*RV---WILSKLRYQRNILQTQIDIHQKI----IAYAAGRAGGTMTGVLSATNENALEMFIDEKIGYLDIF*AEELT*DKHREYLLTSPSLEDIIHYDAWARE 382
            LP   AL +P R+   W    L    N+   + D HQK     +AYAAGRAGG+M  VL+A NE  + +F+DEKI +LDI    EL  D+H+     +PSL+DI+  D WAR+
Sbjct:  269 LPLLYALSWPERIYTDWERLNLVKAGNLTFREPD-HQKYPCMQLAYAAGRAGGSMPAVLNAANEQVVALFLDEKIKFLDIPRCIELVCDRHQNDNCANPSLDDILAADQWARQ 380          
BLAST of FC871180 vs. ExPASy Swiss-Prot
Match: DXR_ANAVT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.930e-13
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 2
Query:   65 LPAH*ALIFP*RV---WILSKLRYQRNILQTQIDIHQKI----IAYAAGRAGGTMTGVLSATNENALEMFIDEKIGYLDIF*AEELT*DKHREYLLTSPSLEDIIHYDAWARE 382
            LP   AL +P R+   W    L    N+   + D HQK     +AYAAGRAGG+M  VL+A NE  + +F+DEKI +LDI    EL  D+H+     +PSL+DI+  D WAR+
Sbjct:  268 LPLLYALSWPERIYTDWEPLNLVKAGNLTFREPD-HQKYPCMQLAYAAGRAGGSMPAVLNAANEQVVALFLDEKIKFLDIPRCIELVCDRHQNDNCANPSLDDILAADQWARQ 379          
BLAST of FC871180 vs. ExPASy Swiss-Prot
Match: DXR_SYNPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain WH8102) GN=dxr PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  173 IAYAAGRAGGTMTGVLSATNENALEMFIDEKIGYLDIF*AEELT*DKHREYLLTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVPA*LLA 442
            +AYAAGRAGGTM  V++A NE A+  F++EKI +LDI    E   ++H+  L+  P LED++  D WAR  A   Q   G + VP   LA
Sbjct:  320 LAYAAGRAGGTMPAVMNAANEEAVAQFLEEKIHFLDIPVVIEAACERHKADLIAHPQLEDVLAVDQWAR-MAVREQVKRGTTRVPLAALA 408          
BLAST of FC871180 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.334e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  173 IAYAAGRAGGTMTGVLSATNENALEMFIDEKIGYLDIF*AEELT*DKHREYLLTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVP 427
            +AYAAGRAGGTM  V++A NE A+  F++E+I +LDI    E   ++H+  L+  P L+D++  D WAR  A   Q S G + +P
Sbjct:  328 LAYAAGRAGGTMPAVMNAANEEAVAQFLEERIHFLDIPEVIEAACERHKPDLMAHPQLDDVLEVDQWART-AVREQVSRGTTRIP 411          
BLAST of FC871180 vs. ExPASy Swiss-Prot
Match: DXR_CYAA5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain ATCC 51142) GN=dxr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  173 IAYAAGRAGGTMTGVLSATNENALEMFIDEKIGYLDIF*AEELT*DKHREYLLTSPSLEDIIHYDAWARE 382
            +AYAAG AGG M  VL+A NE A+ +F+ EKI +LDI    E T D  R++  + PSLEDI+  D WARE
Sbjct:  310 LAYAAGNAGGAMPAVLNAANEQAVALFLAEKIAFLDIPKVIEKTCDNFRDHNRSQPSLEDILEADKWARE 379          
BLAST of FC871180 vs. ExPASy Swiss-Prot
Match: DXR_SYNP6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxr PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  173 IAYAAGRAGGTMTGVLSATNENALEMFIDEKIGYLDIF*AEELT*DKHREYLLTSPSLEDIIHYDAWAREY 385
            +AYAAGR GGTM  VL+A NE A+ +F++E+I + DI    E   D+H+      PSL+DI+ YDAWAR++
Sbjct:  320 LAYAAGRKGGTMPAVLNAANEQAVALFLEEQIHFSDIPRLIERACDRHQTEWQQQPSLDDILAYDAWARQF 390          
The following BLAST results are available for this feature:
BLAST of FC871180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DXR_ARATH2.964e-3075.581-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ORYSJ5.055e-3076.471-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI1.377e-2772.291-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_PROMM1.478e-1347.731-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANASP1.478e-1343.361-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAVT1.930e-1343.361-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNPX3.292e-1345.561-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS97.334e-1343.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAA59.578e-1352.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNP61.251e-1249.301-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAK2AE01FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871180 ID=FC871180; Name=FC871180; organism=Citrus sinensis; type=EST; length=494bp
TCGATCTTCAGATCATAAGTTGATGATGAAGATAAAAAAAATGAAAATAA
TTTCTGTTCTTCTTTTGCCAGCTCATTAAGCACTGATATTTCCTTAACGA
GTTTGGATCTTATCAAAACTACGGTATCAAAGAAATATACTCCAGACACA
AATTGATATACATCAGAAAATCATTGCCTATGCTGCTGGACGGGCTGGAG
GAACCATGACTGGAGTTCTTAGTGCAACTAACGAGAACGCATTAGAGATG
TTCATTGATGAAAAGATTGGCTATCTGGATATTTTCTAGGCTGAGGAGCT
GACGTGAGATAAGCACAGGGAGTACTTGTTAACCTCGCCTTCCCTAGAGG
ATATAATACATTATGATGCATGGGCACGAGAGTATGCAGCTGGTTTGCAA
TTTTCATCTGGTAGAAGCCCTGTTCCAGCATGACTGCTTGCATTGATGCC
CTACTTTGAGAACAAGAGAGAGGTGTTTACTTTTTACCAAAAGC
back to top