- Markers - 3,427 genetic markers consisting of 1514 SNPs, 914 SSRs, 422 RAPD, 246 SRAPs, 88 SCARs, 77 IRAP, 55 Indels, and the remaining markers are RFLPs, Isozymes, ISSR, CAPs, and STS markers. Marker information includes the germplasm it was identified in and reference where it was first described, and when available and relevant, the DNA library, repeat motif, primers, restriction enzyme, among other information.
- Maps - 51 linkage maps with 3,334 loci consisting of 50 genetic linkage maps covering all nine chromosomes and 1 association map.
- QTLs - 74 QTL loci from 8 QTL datasets.
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Genotype
Data from 23 measurements using 3 markers for 3 species
- Species - 26 Citrus species with detailed information such as geographic origins, probable hybrid parentage, genome size, etc.
- Traits - in development
- Images - in development
- Sequences - 181,315 sequences consisting of whole genome sequences (94,438 for Citrus clementina, 46,147 for Citrus sinensis) and 33,846 sequences from NCBI's GenBank.
- Reference - 2,361 references from journal articles, conference proceedings, patents, book chapters, and theses.
- ESTs - Citrus clementina unigene V1, Citrus sinensis unigene V1, Citrus trifoliata unigene V1 all built using ESTs downloaded from GenBank (06/22/2010), filtered for quality and contamination and assembled using CAP3 software.
- Genes - 2192 Generic Genes from GenBank sequences, 24,533 CDS data from the Citrus clementina genome v1.0 (JGI)
- Genomes - Citrus clementina genome v1.0 (JGI), Citrus sinensis genome v1.0 (JGI) and Citrus trifoliata v1.0
Last updated on 1/1/2015