FC868489

Overview
NameFC868489
Unique NameFC868489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9336 contig Ccv1_Contig9336:1..636. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868489 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.285e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3
Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 147.902 bits (372), Expect = 4.074e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRPIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 524
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 3 Score: 68.1662 bits (165), Expect = 4.102e-11
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  525 MQIFVKTLTGKTITLEVESSDTIDNV*AKIQDKGGIP 635
            MQIFVKTLTGKTITLEVESSDTIDNV AKIQDK GIP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37          
BLAST of FC868489 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.400e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 3
Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 146.747 bits (369), Expect = 9.076e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRPIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 524
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 3 Score: 68.1662 bits (165), Expect = 4.102e-11
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  525 MQIFVKTLTGKTITLEVESSDTIDNV*AKIQDKGGIP 635
            MQIFVKTLTGKTITLEVESSDTIDNV AKIQDK GIP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37          
BLAST of FC868489 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.829e-35
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 3
Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 146.362 bits (368), Expect = 1.185e-34
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRPIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 524
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC868489 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.119e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 3
Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRPIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 524
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 3 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  525 MQIFVKTLTGKTITLEVESSDTIDNV*AKIQDKGGIP 635
            MQIFVKTLTGKTITLEVESSDTIDNV +KIQDK GIP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37          
BLAST of FC868489 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.119e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 3
Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRPIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 524
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 3 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  525 MQIFVKTLTGKTITLEVESSDTIDNV*AKIQDKGGIP 635
            MQIFVKTLTGKTITLEVESSDTIDNV +KIQDK GIP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37          
BLAST of FC868489 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.119e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 3
Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRPIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 524
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 3 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  525 MQIFVKTLTGKTITLEVESSDTIDNV*AKIQDKGGIP 635
            MQIFVKTLTGKTITLEVESSDTIDNV +KIQDK GIP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37          
BLAST of FC868489 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.119e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 3
Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRPIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 524
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 3 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  525 MQIFVKTLTGKTITLEVESSDTIDNV*AKIQDKGGIP 635
            MQIFVKTLTGKTITLEVESSDTIDNV +KIQDK GIP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37          
BLAST of FC868489 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.119e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 3
Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.591 bits (366), Expect = 2.022e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRPIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 524
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 3 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3
Query:  525 MQIFVKTLTGKTITLEVESSDTIDNV*AKIQDKGGIP 635
            MQIFVKTLTGKTITLEVESSDTIDNV +KIQDK GIP
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37          
BLAST of FC868489 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.074e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 145.206 bits (365), Expect = 2.641e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 3
Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRPIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 524
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of FC868489 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.321e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 296
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 144.821 bits (364), Expect = 3.449e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 3
Query:  297 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRPIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 524
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQR IFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of FC868489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
UBIQ_ARATH6.285e-36100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_COPCO1.400e-3598.68Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHLRE1.829e-3598.68Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_YEAST3.119e-3597.37Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO3.119e-3597.37Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA3.119e-3597.37Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE3.119e-3597.37Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL3.119e-3597.37Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBL1_ORYSJ4.074e-3597.37Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_NEUCR5.321e-3597.37Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31001A02EF AbioticL1 Citrus clementina cDNA clone C31001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868489 ID=FC868489; Name=FC868489; organism=Citrus clementina; type=EST; length=636bp
GACCCAATCGGGTTATTCGATATTCTCAACAAATCTCTCCAATTCTCTCG
CTAAGAAACTTTTAAAAGATGCAGATCTTCGTGAAAACCCTAACCGGCAA
GACCATTACTCTCGAAGTCGAGAGCTCCGACACCATCGACAACGTCAAGG
CCAAGATCCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGCGTCTGATC
TTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACAATAT
CCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGCATGC
AGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTTGAG
AGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGG
GATTCCGCCGGACCAGCAGAGGCCGATCTTCGCCGGAAAGCAACTCGAGG
ACGGCCGCACCTTGGCCGATTACAATATCCAGAAGGAATCAACTCTTCAC
CTCGTGCTTCGTCTCCGTGGGGGCATGCAGATATTCGTCAAAACCCTAAC
GGGAAAGACGATTACCCTCGAAGTCGAGAGCTCCGACACGATCGACAACG
TCTAGGCCAAGATCCAGGACAAGGGAGGGATTCCGC
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