FC868498

Overview
NameFC868498
Unique NameFC868498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU2_THET8 (Elongation factor Tu-B OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufB PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.631e-20
Identity = 60/154 (38.96%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+N+  IGHVD GK+T T  L +                AAE      K    +DK   ER RGITI+ A  ++ET K + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAALTFVT--------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVD 140          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_PEDPA (Elongation factor Tu OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 63/154 (40.91%), Postives = 87/154 (56.49%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGHVD GK+T T         I K + E+   +A++       YA + D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLSEKGLAKASD-------YADI-DAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAHQVGVDYIVVFLNKTD 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_MOOTA (Elongation factor Tu OS=Moorella thermoacetica (strain ATCC 39073) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+N+  IGHVD GK+T T  + + L      V   +++               +DK   ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITFCLAKAGGAVPTAYDQ---------------IDKAPEERERGITIATAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVD 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_DESHY (Elongation factor Tu OS=Desulfitobacterium hafniense (strain Y51) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+N+  IGHVD GK+T+T  +   L      V + F++               +DK   ERERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTSTAAITLVLSKAGGAVAQAFDQ---------------IDKAPEERERGITISTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVWLNKAD 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_DESHD (Elongation factor Tu OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+N+  IGHVD GK+T+T  +   L      V + F++               +DK   ERERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTSTAAITLVLSKAGGAVAQAFDQ---------------IDKAPEERERGITISTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVWLNKAD 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_CLOTE (Elongation factor Tu OS=Clostridium tetani GN=tufA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 66/182 (36.26%), Postives = 96/182 (52.75%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGY 632
            + K H+NI  IGHVD GK+T T  +   LG       + F K        +FKY  + DK   E+ERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +   A   E+V+ EV   + + G+
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTILGH------KGFAK--------AFKYDEI-DKAPEEKERGITISTSHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEHIVVFLNKAD----QVDDAELIELVEMEVRELMNEYGF 163          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_CAMHC (Elongation factor Tu OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 67/181 (37.02%), Postives = 93/181 (51.38%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 632
            + K H+NI  IGHVD GK+T T  +          V+ R  K  AE+   S      +D    E+ERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L+I ST G          QTREH LLA  +GV  ++   NK D           + + +EV   LK+ G+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAI--------SAVLSR--KGLAELKDYSN-----IDNAPEEKERGITIATSHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVIASTDGPM-------AQTREHILLARQVGVPYIVVFLNKTDMVD---DPELIELVEEEVKDLLKEYGF 163          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: CYSN_SALAR (Sulfate adenylyltransferase subunit 1 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=cysN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 64/220 (29.09%), Postives = 108/220 (49.09%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK------VGYTPRKSHSCPISGSRVTHD*EVYHLDWYRGPT 725
            + K+ +  +  G VD GKST  G L++    I +  +     ++     +  K   A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     Y +  +  I ++  ++ ++      + + P  +    + G  V    +  ++ WY GPT
Sbjct:   23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLV--DYREETFARIREDYLTFAERLPGDLDIRFVPLSA----LEGDNVAA--QSANMRWYSGPT 227          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: CYSN_PSEA6 (Sulfate adenylyltransferase subunit 1 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=cysN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 63/180 (35.00%), Postives = 97/180 (53.89%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFK---------YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKE 602
            ++K  +  +  G VD GKST  G L++     D ++I  +E + A + K S K          A ++D L +ERE+GITID+A   F T K    + D PGH  + +NM+TG S  D A++++D+      AG+    QTR H+ L   LG+K +I   NKMD    ++S+  Y+ I K+
Sbjct:   20 EQKDMLRFLTCGSVDDGKSTLIGRLLH-----DSKMI--YEDQLAAITKDSKKSGTTGDKVDLALLVDGLASEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMVTGASTCDLAIILVDA-----RAGVKT--QTRRHSFLVSLLGIKHVIVAINKMDLM--EFSEEVYENIKKD 183          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_PROAC (Elongation factor Tu OS=Propionibacterium acnes GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 61/155 (39.35%), Postives = 87/155 (56.13%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS-FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H NI  IGH+D GK+T T         I K + +++     E+N+ S F     +DK   ER+RGITI IA  +++T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHCNIGTIGHIDHGKTTLTA-------AISKVLHDKYP----ELNEESPFDQ---IDKAPEERQRGITISIAHIEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPAIVVALNKCD 141          
The following BLAST results are available for this feature:
BLAST of FC868498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_THET81.631e-2038.96Elongation factor Tu-B OS=Thermus thermophilus (st... [more]
EFTU_PEDPA2.130e-2040.91Elongation factor Tu OS=Pediococcus pentosaceus (s... [more]
EFTU_MOOTA2.130e-2037.01Elongation factor Tu OS=Moorella thermoacetica (st... [more]
EFTU_DESHY2.130e-2036.36Elongation factor Tu OS=Desulfitobacterium hafnien... [more]
EFTU_DESHD2.130e-2036.36Elongation factor Tu OS=Desulfitobacterium hafnien... [more]
EFTU_CLOTE2.130e-2036.26Elongation factor Tu OS=Clostridium tetani GN=tufA... [more]
EFTU_CAMHC2.130e-2037.02Elongation factor Tu OS=Campylobacter hominis (str... [more]
CYSN_SALAR2.130e-2029.09Sulfate adenylyltransferase subunit 1 OS=Salmonell... [more]
CYSN_PSEA62.130e-2035.00Sulfate adenylyltransferase subunit 1 OS=Pseudoalt... [more]
EFTU_PROAC2.783e-2039.35Elongation factor Tu OS=Propionibacterium acnes GN... [more]

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Properties
Property NameValue
Genbank descriptionC31001B02EF AbioticL1 Citrus clementina cDNA clone C31001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868498 ID=FC868498; Name=FC868498; organism=Citrus clementina; type=EST; length=728bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCAT
TCGTGCCCNATCTCTGGTTCGAGGGTGACACATGATTGAGAGGTCTACCA
CCTTGACTGGTACAGGGGTCCAACCTGC
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