FC868498

Overview
NameFC868498
Unique NameFC868498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT2 (Elongation factor Tu OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=tuf PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 63/191 (32.98%), Postives = 96/191 (50.26%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTPRKSHSCPI 662
            + K HINI  IGHVD GK+T T  +   L G                    F+    +D    E+ RGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E++  L++ GY       CPI
Sbjct:    8 RNKPHINIGTIGHVDHGKTTLTAAITRTLSGD---------------GLADFRDYSSIDNTPEEKARGITINASHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISEEDAEL-VDLVEMELAELLEEKGY-----KGCPI 170          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPD (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 61/159 (38.36%), Postives = 83/159 (52.20%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 566
            ++K H+NI  IGHVD GK+T T  +   L             +     +R F     +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVLA------------KQGLAQQRDFGS---IDKAPEERERGITISTAHVEYQTKKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVYLNKVDIADPE 144          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_CHLL2 (Elongation factor Tu OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 62/159 (38.99%), Postives = 85/159 (53.46%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 566
            ++K H+NI  IGHVD GK+T T  +   L            K+   + +R F     +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVLA-----------KQGLAL-QRDFGS---IDKAPEERERGITISTAHVEYQTKKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPE 144          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_BORT9 (Elongation factor Tu OS=Borrelia turicatae (strain 91E135) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 58/175 (33.14%), Postives = 93/175 (53.14%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSY 614
            + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D AVL++ + +G        + QT+EH LLA  +G+ ++I   NK+D   P+  +    E+++ V  Y
Sbjct:    8 RTKPHMNVGTIGHVDHGKTTLTAAISIYCSKVNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETAGMHYAHVDCPGHADYIKNMITGAAQMDAAVLLVAADSGA-------EPQTKEHLLLAQRMGINKIIVFLNKLDLADPELVELVEVEVLELVEKY 161          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_ARCB4 (Elongation factor Tu OS=Arcobacter butzleri (strain RM4018) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 61/176 (34.66%), Postives = 90/176 (51.14%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL 617
            + K H+NI  IGHVD GK+T T         I   +  ++  E  + ++        +D    ERERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L+I ST G          QTREH LL+  +GV  ++   NK D   P+  +   + +  E+   L
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTA-------AISAVLAVKYGGEMKDYDQ--------IDNAPEERERGITIATSHIEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGAILVIASTDGPM-------AQTREHILLSKQVGVPYIVVFMNKEDQLDPQDKEEMLELVEMEIRELL 161          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: CYSN_FRATW (Sulfate adenylyltransferase subunit 1 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=cysN PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 68/189 (35.98%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY---------AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG 629
            ++K  +  +  G VD GKST  G L++     D ++I  FE + A +   S K          A ++D L++ERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+++ID+  G          QTR H+ +   LG+K +I   NKMD  T  YS+  Y  I  E   YLK  G
Sbjct:   20 QQKELLRFITCGSVDDGKSTLMGRLLH-----DSKLI--FEDQLASIVADSKKVGTQGDRLDLALLVDGLQSEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMATGASNCDLAIILIDARKG-------LQTQTRRHSFICSLLGIKHVIVAVNKMD--TVGYSQQIYKSIQDE---YLKLAG 189          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: CYSN_FRATN (Sulfate adenylyltransferase subunit 1 OS=Francisella tularensis subsp. novicida (strain U112) GN=cysN PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 68/189 (35.98%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY---------AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG 629
            ++K  +  +  G VD GKST  G L++     D ++I  FE + A +   S K          A ++D L++ERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+++ID+  G          QTR H+ +   LG+K +I   NKMD  T  YS+  Y  I  E   YLK  G
Sbjct:   20 QQKELLRFITCGSVDDGKSTLIGRLLH-----DSKLI--FEDQLASIVADSKKVGTQGDRLDLALLVDGLQSEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMATGASNCDLAIILIDARKG-------LQTQTRRHSFICSLLGIKHVIVAVNKMD--TVGYSQQIYKSIQDE---YLKLAG 189          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_RICBR (Elongation factor Tu OS=Rickettsia bellii (strain RML369-C) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVD 140          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_RICB8 (Elongation factor Tu OS=Rickettsia bellii (strain OSU 85-389) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 56/155 (36.13%), Postives = 86/155 (55.48%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVD 140          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_NOVAD (Elongation factor Tu OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 59/154 (38.31%), Postives = 79/154 (51.30%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H NI  IGHVD GK+T T  +                K  AE     F     +DK   ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LLA  +GV  ++   NK+D
Sbjct:    8 RNKPHCNIGTIGHVDHGKTTLTAAIT---------------KVLAEQGGAEFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLARQVGVPALVVYMNKVD 139          
The following BLAST results are available for this feature:
BLAST of FC868498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CHLT22.783e-2032.98Elongation factor Tu OS=Chlamydia trachomatis (str... [more]
EFTU_CHLPD2.783e-2038.36Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]
EFTU_CHLL22.783e-2038.99Elongation factor Tu OS=Chlorobium limicola (strai... [more]
EFTU_BORT92.783e-2033.14Elongation factor Tu OS=Borrelia turicatae (strain... [more]
EFTU_ARCB42.783e-2034.66Elongation factor Tu OS=Arcobacter butzleri (strai... [more]
CYSN_FRATW2.783e-2035.98Sulfate adenylyltransferase subunit 1 OS=Francisel... [more]
CYSN_FRATN2.783e-2035.98Sulfate adenylyltransferase subunit 1 OS=Francisel... [more]
EFTU_RICBR3.634e-2036.13Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_RICB83.634e-2036.13Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_NOVAD3.634e-2038.31Elongation factor Tu OS=Novosphingobium aromaticiv... [more]

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Properties
Property NameValue
Genbank descriptionC31001B02EF AbioticL1 Citrus clementina cDNA clone C31001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868498 ID=FC868498; Name=FC868498; organism=Citrus clementina; type=EST; length=728bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCAT
TCGTGCCCNATCTCTGGTTCGAGGGTGACACATGATTGAGAGGTCTACCA
CCTTGACTGGTACAGGGGTCCAACCTGC
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