FC868498

Overview
NameFC868498
Unique NameFC868498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPE (Elongation factor Tu OS=Mycoplasma penetrans GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 64/182 (35.16%), Postives = 94/182 (51.65%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGY 632
            + K H+NI  IGH+D GK+T T  +   L              A +   ++ KY  + DK   E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ ++ G          QTREH LLA  +GV +M+   NK D      S A   ++V+ EV   L   G+
Sbjct:    8 RSKAHVNIGTIGHIDHGKTTLTAAICTYL--------------AKKGGAKAMKYDEI-DKAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDGPMP-------QTREHILLARQVGVPKMVVFLNKCDMV----SDAEMQDLVEMEVRELLSSYGF 163          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_MYCGI (Elongation factor Tu OS=Mycobacterium gilvum (strain PYR-GCK) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGHVD GK+T T  +   L             +  ++N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVL-----------HDQYPDLNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKAD 141          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_MYCAP (Elongation factor Tu OS=Mycoplasma agalactiae (strain PG2) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 62/181 (34.25%), Postives = 91/181 (50.28%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 632
            + K H+NI  IGHVD GK+T T  +   L               A+      K    +D    E+ RGITI+ +  ++ T K +   +D PGH D+IKNMITG +Q D ++L++ +T G          QT+EH LLA  +GV +M+   NK D   P+ ++   D +  EV   L K G+
Sbjct:    8 RSKEHVNIGTIGHVDHGKTTLTAAIATVL---------------AKKGLSEAKSYDAIDNAPEEKARGITINTSHIEYNTEKRHYAHVDCPGHADYIKNMITGAAQMDGSILVVAATDGAMP-------QTKEHVLLAKQVGVPKMVVFLNKCDMIKPEDAE-MIDLVEMEVRELLTKYGF 165          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 63/161 (39.13%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   84 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            MGKEK      H+NI  IGH+D GK+T T   I K+  +             +M  ++  Y  + DK   E+ERGITI  A  ++ETT  +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    1 MGKEKFERTKPHVNIGTIGHIDHGKTTLTA-AITKIASL-------------KMGSKAVAYDEI-DKAPEEKERGITIATAHVEYETTLRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPSIVVFLNKCD 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_DESAH (Elongation factor Tu OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 60/154 (38.96%), Postives = 79/154 (51.30%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGH+D GK+T T  +                K AA      F     +DK   ERERGITI  A  ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTAAIT---------------KHAALRGFGKFVAFDEIDKAPEERERGITISTAHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSADDGPMP-------QTREHILLARQVGVPSIVVFLNKCD 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_BRELN (Elongation factor Tu OS=Brevibacterium linens GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 59/155 (38.06%), Postives = 90/155 (58.06%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R+F     +D    E+ERGITI+++  +++T K +   +DAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLADQYP----DLNEARAFDQ---VDNAPEEKERGITINVSHVEYQTEKRHYAHVDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYIVVALNKSD 141          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_ANAVT (Elongation factor Tu OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGHVD GK+T T  +   L  + + V + +++               +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMTLAALGQAVAKGYDQ---------------IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVGVPKLVVFLNKED 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_ANASP (Elongation factor Tu OS=Anabaena sp. (strain PCC 7120) GN=tuf PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGHVD GK+T T  +   L  + + V + +++               +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMTLAALGQAVAKGYDQ---------------IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVGVPKLVVFLNKED 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTU_ACAM1 (Elongation factor Tu OS=Acaryochloris marina (strain MBIC 11017) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 56/154 (36.36%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            + K H+NI  IGHVD GK+T T  +   L  + +    +++                +D    ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D AVL++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMSLAALGQAKARKYDD---------------IDAAPEERERGITINTAHVEYETQDRHYAHVDCPGHADYVKNMITGAAQMDGAVLVVSAADGPMP-------QTREHILLAKQVGVPNIVVFMNKQD 139          
BLAST of FC868498 vs. ExPASy Swiss-Prot
Match: EFTUB_NICSY (Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 55/154 (35.71%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 551
            ++K H+NI  IGHVD GK+T T  L   L  +     +++++               +D    ER RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++    G          QT+EH LLA  +GV  M+   NK D
Sbjct:   84 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE---------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNMVVFLNKQD 215          
The following BLAST results are available for this feature:
BLAST of FC868498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCPE3.634e-2035.16Elongation factor Tu OS=Mycoplasma penetrans GN=tu... [more]
EFTU_MYCGI3.634e-2038.71Elongation factor Tu OS=Mycobacterium gilvum (stra... [more]
EFTU_MYCAP3.634e-2034.25Elongation factor Tu OS=Mycoplasma agalactiae (str... [more]
EFTU_DESDG3.634e-2039.13Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_DESAH3.634e-2038.96Elongation factor Tu OS=Desulfobacterium autotroph... [more]
EFTU_BRELN3.634e-2038.06Elongation factor Tu OS=Brevibacterium linens GN=t... [more]
EFTU_ANAVT3.634e-2035.71Elongation factor Tu OS=Anabaena variabilis (strai... [more]
EFTU_ANASP3.634e-2035.71Elongation factor Tu OS=Anabaena sp. (strain PCC 7... [more]
EFTU_ACAM13.634e-2036.36Elongation factor Tu OS=Acaryochloris marina (stra... [more]
EFTUB_NICSY3.634e-2035.71Elongation factor TuB, chloroplastic OS=Nicotiana ... [more]

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Properties
Property NameValue
Genbank descriptionC31001B02EF AbioticL1 Citrus clementina cDNA clone C31001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868498 ID=FC868498; Name=FC868498; organism=Citrus clementina; type=EST; length=728bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCAT
TCGTGCCCNATCTCTGGTTCGAGGGTGACACATGATTGAGAGGTCTACCA
CCTTGACTGGTACAGGGGTCCAACCTGC
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