FC868503 | Citrus Genome Database

Overview


Name	FC868503
Unique Name	FC868503
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	681

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.359e-18
Identity = 50/136 (36.76%), Postives = 68/136 (50.00%), Query Frame = 2

Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYN 610
            E  K  F+RAV+AEF+A            +G+K     N    Q      + ++ AFG  I  L      ISG H+NPAVT GL L  ++S+ RAL+Y++AQC+GAI     +     S       G N+LADG N
Sbjct:    4 EFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDN----VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGN-SLGRNDLADGVN 134

HSP 2 Score: 30.4166 bits (67), Expect = 2.359e-18
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  604 IQQGTGLGAEIIGTFVLVYTVFSATD 681
            +  G GLG EIIGT  LV  V + TD
Sbjct:  133 VNSGQGLGIEIIGTLQLVLCVLATTD 158

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 3.067e-18
Identity = 50/136 (36.76%), Postives = 68/136 (50.00%), Query Frame = 2

Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYN 610
            E  K  F+RAV+AEF+A            +G+K     N    Q      + ++ AFG  I  L      ISG H+NPAVT GL L  ++S+ RAL+Y++AQC+GAI     +     S       G N+LADG N
Sbjct:    4 EFKKKLFWRAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDN----VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGN-SLGRNDLADGVN 134

HSP 2 Score: 30.4166 bits (67), Expect = 3.067e-18
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  604 IQQGTGLGAEIIGTFVLVYTVFSATD 681
            +  G GLG EIIGT  LV  V + TD
Sbjct:  133 VNSGQGLGIEIIGTLQLVLCVLATTD 158

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.927e-17
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 2

Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYN 610
            E+ K  F+RAV+AEF+A            +G+    + N    Q      + ++ AFG  I  L      ISG H+NPAVT GL L  ++S++RA++Y++AQC+GAI     +     S  +    G N+LA G N
Sbjct:    4 EIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDN----VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDN-SLGRNDLAHGVN 134

HSP 2 Score: 30.4166 bits (67), Expect = 1.927e-17
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  604 IQQGTGLGAEIIGTFVLVYTVFSATD 681
            +  G GLG EIIGT  LV  V + TD
Sbjct:  133 VNSGQGLGIEIIGTLQLVLCVLATTD 158

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 3.257e-17
Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 2

Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYN 610
            E+ K  F+RAV+AEF+A            +G+    + N    Q      + ++ AFG  I  L      ISG H+NPAVT GL L  ++S++RA++Y++AQC+GAI     +     S       G N+LA G N
Sbjct:    4 EIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDN----VKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLEN-SLGRNDLARGVN 134

HSP 2 Score: 30.4166 bits (67), Expect = 3.257e-17
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  604 IQQGTGLGAEIIGTFVLVYTVFSATD 681
            +  G GLG EIIGT  LV  V + TD
Sbjct:  133 VNSGQGLGIEIIGTLQLVLCVLATTD 158

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.235e-17
Identity = 49/137 (35.77%), Postives = 69/137 (50.36%), Query Frame = 2

Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGV-GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYN 610
            E  K  F+RAV+AEF+A            +G+     P  N    G     + ++ AFG  I  L      ISG H+NPAVT GL L  ++S++RA++Y++AQC+GAI     +     S  +    G NELA G N
Sbjct:    4 EFKKKLFWRAVVAEFLAMILFVFISIGSALGFNY---PVRNNQTAGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDN-SLGRNELAPGVN 136

HSP 2 Score: 30.4166 bits (67), Expect = 4.235e-17
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  604 IQQGTGLGAEIIGTFVLVYTVFSATD 681
            +  G GLG EIIGT  LV  V + TD
Sbjct:  135 VNSGQGLGIEIIGTLQLVLCVLATTD 160

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.572e-16
Identity = 49/137 (35.77%), Postives = 69/137 (50.36%), Query Frame = 2

Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGV-GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYN 610
            E  K  F+RAV+AEF+A            +G+      N  T   G V   + ++ AFG  I  L      ISG H+NPAVT GL L  ++S++RA++Y++AQC+GAI     +     S  +    G N LA G N
Sbjct:    4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTT---GAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDN-SLGLNALAPGVN 136

HSP 2 Score: 30.4166 bits (67), Expect = 1.572e-16
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  604 IQQGTGLGAEIIGTFVLVYTVFSATD 681
            +  G GLG EIIGT  LV  V + TD
Sbjct:  135 VNSGQGLGIEIIGTLQLVLCVLATTD 160

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 2.656e-16
Identity = 49/137 (35.77%), Postives = 69/137 (50.36%), Query Frame = 2

Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGV-GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYN 610
            E  K  F+RAV+AEF+A            +G+      N  T   G V   + ++ AFG  I  L      ISG H+NPAVT GL L  ++S++RA++Y++AQC+GAI     +     S  +    G N LA G N
Sbjct:    4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTT---GAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDN-SLGLNALAPGVN 136

HSP 2 Score: 30.4166 bits (67), Expect = 2.656e-16
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  604 IQQGTGLGAEIIGTFVLVYTVFSATD 681
            +  G GLG EIIGT  LV  V + TD
Sbjct:  135 VNSGQGLGIEIIGTLQLVLCVLATTD 160

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 9.855e-16
Identity = 47/135 (34.81%), Postives = 67/135 (49.63%), Query Frame = 2

Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGV-GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADG 604
            E  K  F+RAV+AEF+A            +G++    P  N    G     + ++ AFG  I  L      ISG H+NPAVT GL L  ++S++RA++Y++AQC+GAI     +     S       G N LA G
Sbjct:    4 EFKKKIFWRAVVAEFLAMTLFIFISIGSALGFQY---PVRNNQTSGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSSLPGN-SLGLNSLAPG 134

HSP 2 Score: 30.4166 bits (67), Expect = 9.855e-16
Identity = 14/26 (53.85%), Postives = 16/26 (61.54%), Query Frame = 1

Query:  604 IQQGTGLGAEIIGTFVLVYTVFSATD 681
            +  G GLG EIIGT  LV  V + TD
Sbjct:  135 VDSGQGLGIEIIGTLQLVLCVLATTD 160

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.976e-14
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 2

Query:  200 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC 532
            EE+   +  RA +AEFI+            I +   TD    T    G+    +A AFG  +F+ V   A ISGGH+NPAVTFG+ LG  ++L+R +LY +AQ LG++  C
Sbjct:   13 EEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPS--GLVAAALAHAFG--LFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAAC 119

HSP 2 Score: 21.9422 bits (45), Expect = 2.976e-14
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1

Query:  631 EIIGTFVLVYTVFS 672
            EI+ TF LVYTV++
Sbjct:  149 EIVMTFGLVYTVYA 162

[Close]

BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.431e-13
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 2

Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 544
            +A +AEFI+            + +   T+    T    G+    +A AFG  +F+ V   A ISGGH+NPAVTFG F+G  ++L+R +LY +AQ LG++  C  +K
Sbjct:   21 KAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPS--GLVAAAVAHAFG--LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILK 122

HSP 2 Score: 21.9422 bits (45), Expect = 1.431e-13
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1

Query:  631 EIIGTFVLVYTVFS 672
            EI+ TF LVYTV++
Sbjct:  148 EIVMTFGLVYTVYA 161

The following BLAST results are available for this feature:

BLAST of FC868503 vs. ExPASy Swiss-Prot

BLAST of FC868503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91


Match Name	E-value	Identity	Description
AQP1_HUMAN	2.359e-18	36.76	Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3	[more]
AQP1_PONAB	3.067e-18	36.76	Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3	[more]
AQP1_MOUSE	1.927e-17	34.56	Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3	[more]
AQP1_RAT	3.257e-17	34.56	Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4	[more]
AQP1_CANFA	4.235e-17	35.77	Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3	[more]
AQP1_BOVIN	1.572e-16	35.77	Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3	[more]
AQP1_SHEEP	2.656e-16	35.77	Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3	[more]
AQP1_PIG	9.855e-16	34.81	Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3	[more]
TIP12_ARATH	2.976e-14	38.74	Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2...	[more]
TIP11_ARATH	1.431e-13	36.79	Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31001B11EF AbioticL1 Citrus clementina cDNA clone C31001B11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC868503 ID=FC868503; Name=FC868503; organism=Citrus clementina; type=EST; length=681bp
CTTCCCCGGGGAGGATCATTAAACTCTGTAGCTCCACAACAGTCGTAGCT
CTTGTTTCTCCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAA
ATGGGGAAGGATGTTGAAGTTGCTGAGCAGCAAGGCGGCAGCGGCGAGTT
CTCAGCCAAGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCG
AGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATC
GCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAA
GAGCCAGACTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCA
TTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTAC
TGCACAGCCGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGG
ACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGG
TAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTC
CAAAAATCATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGA
TGGATACAACAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGT
TCTTGTCTACACTGTTTTCTCTGCCACTGAT