FC868503

Overview
NameFC868503
Unique NameFC868503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13179 contig Ccv1_Contig13179:32..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.416e-13
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  197 FEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGY-KSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 544
            F++    +  RA +AEFI+            I Y K  +D  L+T      G++ IA   G  +F+ V   A ISGGH+NPAVTFGL +G ++++I  + Y +AQ LG+   C  +K
Sbjct:    9 FDDSFSLASLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTP-----GLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK 120          

HSP 2 Score: 24.2534 bits (51), Expect = 2.416e-13
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  619 GLGAEIIGTFVLVYTVFS 672
            G+  EII TF LVYTV++
Sbjct:  142 GVVMEIIITFALVYTVYA 159          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.136e-13
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 544
            +A +AEFI+            + +   TD    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  +SL++AL+Y VAQ LG++  C  +K
Sbjct:   21 KAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATP----AGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLK 122          

HSP 2 Score: 20.7866 bits (42), Expect = 3.136e-13
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  631 EIIGTFVLVYTVFS 672
            E++ TF LVYTV++
Sbjct:  148 EMVMTFGLVYTVYA 161          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.137e-13
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 544
            +A +AEFI+            + +   TD    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  +SL++A++Y VAQ LG++  C  +K
Sbjct:   21 KAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPS----GLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLK 122          

HSP 2 Score: 21.9422 bits (45), Expect = 3.137e-13
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  631 EIIGTFVLVYTVFS 672
            EI+ TF LVYTV++
Sbjct:  148 EIVMTFGLVYTVYA 161          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 42/134 (31.34%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  203 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADG 604
            E  K +F+RAVIAEF+A            +G+    +   N        I+ ++ AFG  I  +      +SG H+NPAVT G  L  ++S+++A++Y++AQCLGA+     +        N    G N L+ G
Sbjct:    4 EFKKKAFWRAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENN-SLGLNGLSPG 136          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.160e-12
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAI 523
            +A +AEFI+            I Y   T+    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  ++L+R ++Y++AQ LG+I
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATP----AGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSI 115          

HSP 2 Score: 24.6386 bits (52), Expect = 1.160e-12
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  604 IQQGTGLGA----EIIGTFVLVYTVFS 672
            + +G G+G     EI+ TF LVYTV++
Sbjct:  134 LSEGVGVGPALVLEIVMTFGLVYTVYA 160          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.953e-12
Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 2
Query:  200 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 541
            +E+   +F +AV AEF+A            + + S               IL IA AFG  I  L      +SGGHINPA+T  L +G ++SL+RA+ Y+VAQ +GAI G G +
Sbjct:    3 KEVCSLAFLKAVFAEFLATLIFVFFGLASALKWPSALPT-----------ILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGIL 105          

HSP 2 Score: 21.9422 bits (45), Expect = 1.953e-12
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  613 GTGLGAEIIGTFVLVYTVFSATD 681
            G  +  E+I TF L   +FS+TD
Sbjct:  129 GQAVVVEMILTFQLALCIFSSTD 151          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.956e-12
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 544
            RA  AEF +            + Y   T     T      G++  + +    +F+ V   A +SGGH+NPAVTFG F+G  ++L+RA+LY +AQ LGA+  C  +K
Sbjct:   21 RAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATP----AGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLK 122          

HSP 2 Score: 21.9422 bits (45), Expect = 1.956e-12
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  631 EIIGTFVLVYTVFS 672
            EI+ TF LVYTV++
Sbjct:  148 EIVMTFGLVYTVYA 161          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.957e-12
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQT-DPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 544
            +A +AEFIA            I Y   T D  L+       G++ +A A    +F+ V   A +SGGH+NPAVT GL +G  ++++  L Y +AQCLG+   C  +K
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDP-----AGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK 120          

HSP 2 Score: 24.2534 bits (51), Expect = 1.957e-12
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  619 GLGAEIIGTFVLVYTVFS 672
            G+  EII TF LVYTV++
Sbjct:  142 GVVMEIIITFALVYTVYA 159          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.957e-12
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 2
Query:  227 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVK 544
            +A +AEFIA            I Y   T    N       G++ IA A    +F+ V   A ISGGH+NPAVTFGL +G  ++++  L Y +AQ LGA   C  +K
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYGQLT----NGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLK 120          

HSP 2 Score: 24.2534 bits (51), Expect = 1.957e-12
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  604 IQQGTGLGAEIIGTFVLVYTVFS 672
            I +  G+  EI+ TF LVYTV++
Sbjct:  136 ISELEGVVMEIVITFALVYTVYA 158          
BLAST of FC868503 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  188 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFV 541
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y++AQCLGAI G G +
Sbjct:   23 MVAFKGVWTQAFWKAVSAEFLATLIFVLLGVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL 133          
The following BLAST results are available for this feature:
BLAST of FC868503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
TIP21_ARATH2.416e-1335.90Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP12_MAIZE3.136e-1336.79Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP12_ORYSJ3.137e-1335.85Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
AQPA_RANES4.982e-1331.34Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
TIP1_MEDTR1.160e-1236.36Probable aquaporin TIP-type OS=Medicago truncatula... [more]
AQP5_PIG1.953e-1236.84Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
TIP13_ARATH1.956e-1234.91Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP_ANTMA1.957e-1235.51Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP21_ORYSJ1.957e-1237.74Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
AQP4_MOUSE2.472e-1234.75Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31001B11EF AbioticL1 Citrus clementina cDNA clone C31001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868503 ID=FC868503; Name=FC868503; organism=Citrus clementina; type=EST; length=681bp
CTTCCCCGGGGAGGATCATTAAACTCTGTAGCTCCACAACAGTCGTAGCT
CTTGTTTCTCCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAA
ATGGGGAAGGATGTTGAAGTTGCTGAGCAGCAAGGCGGCAGCGGCGAGTT
CTCAGCCAAGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCG
AGGAGCTGGGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATC
GCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAA
GAGCCAGACTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCA
TTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTAC
TGCACAGCCGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGG
ACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGG
TAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTC
CAAAAATCATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGA
TGGATACAACAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGT
TCTTGTCTACACTGTTTTCTCTGCCACTGAT
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