FC868507

Overview
NameFC868507
Unique NameFC868507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA_BRUME (Pyrophosphate-energized proton pump OS=Brucella melitensis GN=hppA PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.334e-39
Identity = 93/221 (42.08%), Postives = 130/221 (58.82%), Query Frame = 2
Query:   11 LALFAA------FVSRAGITTVDVLTPKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGV-----------LAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFA 622
            LA FAA      + +  G  + D+  P V  GLI   ++PY F  M M +VG A   +V+EVRRQF   PG+M G  +PDYA  V + T A+I+EMI P  L +L P++V  +FGV  +SG            L G +++G+ +AIS ++ GGAWDNAKK  E G ++       KGSE HKA+V GDT+GDP KDT+GP++N  IK+  + +L+     A
Sbjct:  497 LAYFAANGQIYPYFADMGPVSFDLSNPYVVAGLIFGGLIPYLFGGMAMTAVGRAGGAVVQEVRRQFREKPGIMTGKERPDYARAVDLLTKAAIREMIIPSLLPVLAPIVV--YFGVLLISGSKAAAFAALGASLLGVIINGLFVAISMTSGGGAWDNAKKSFEDGFTDADGVKHMKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKITNIVALLLLAVLA 715          
BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA_OCHA4 (Pyrophosphate-energized proton pump OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=hppA PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.660e-39
Identity = 94/221 (42.53%), Postives = 130/221 (58.82%), Query Frame = 2
Query:   11 LALFAA------FVSRAGITTVDVLTPKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGV-----------LAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFA 622
            LA FAA      + +  G  + D+  P V  GLI   ++PY F  M M +VG A   +V+EVRRQF   PG+M G  +PDYA  V + T A+I+EMI P  L +L P++V  +FGV  +SG            L G +V+G+ +AIS ++ GGAWDNAKK  E G ++       KGSE HKA+V GDT+GDP KDT+GP++N  IK+  + +L+     A
Sbjct:  497 LAYFAANGQTYPYFADMGPVSFDLSNPYVVAGLIFGGLIPYLFGGMAMTAVGRAGGAVVQEVRRQFREKPGIMTGKERPDYARAVDLLTRAAIREMIIPSLLPVLAPIVV--YFGVLLISGSKAAAFAALGASLLGVIVNGLFVAISMTSGGGAWDNAKKSFEDGFTDADGVKHLKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKITNIVALLLLAVLA 715          
BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA_AGRT5 (Pyrophosphate-energized proton pump OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hppA PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.392e-39
Identity = 88/204 (43.14%), Postives = 122/204 (59.80%), Query Frame = 2
Query:   44 GITTVDVLTPKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFA 622
            G  +  +  P V  GL+   ++PY F  + M +VG AA  +VEEVRRQF   PG+M GT KPDY   V + T A+I+EM+ P  L +L PL+V  +FGV  +SG            L G +++G+ +AIS ++ GGAWDNAKK  E G  +       KGSE HKA+V GDT+GDP KDT+GP++N  IK+  + +L+     A
Sbjct:  512 GEISFSLANPYVVAGLLFGGLIPYLFGGIAMTAVGKAASAIVEEVRRQFREKPGIMAGTEKPDYGRAVDLLTKAAIREMVIPSLLPVLAPLVV--YFGVLLISGSKASAFAALGASLLGVIINGLFVAISMTSGGGAWDNAKKSFEDGFIDKDGVRHVKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKITNIVALLLLAVLA 713          
BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA_STRAW (Pyrophosphate-energized proton pump OS=Streptomyces avermitilis GN=hppA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.647e-38
Identity = 80/186 (43.01%), Postives = 118/186 (63.44%), Query Frame = 2
Query:   56 VDVLTPKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAP 613
            +D+  P   +GLI  A + + FS + + +V  +A  +V EVRRQF   PG+M+ T +P+Y   V I T  +++E+  PG L +L P+ +G   GV  L   LAG++ +G  +A+  +N+GGAWDNAKK +E G        G KGSE H A VIGDT+GDP KDT+GP++N L+K+M + +L+ AP
Sbjct:  562 MDISQPNNLVGLIAGAAVVFLFSGLAINAVSRSAGAVVYEVRRQFREHPGIMDYTEQPEYGRVVDICTKDALRELATPGLLAVLAPIAIGFTLGVGALGAYLAGAIGTGTLMAVFLANSGGAWDNAKKLVEDGHH------GGKGSEAHAATVIGDTVGDPFKDTAGPAINPLLKVMNLVALLIAP 741          
BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA1_MYCDI (Pyrophosphate-energized proton pump 1 (Fragment) OS=Mycoplana dimorpha GN=hppA1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.647e-38
Identity = 92/208 (44.23%), Postives = 125/208 (60.10%), Query Frame = 2
Query:   11 LALFAA------FVSRAGITTVDVLTPKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSG-----------VLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKL 583
            L+ FAA      + +  G  + D+  P V  GLI   ++PY F  + M +VG AA  +VEEVRRQF   PG+M+G  KP+Y   V + T A+I+EMI P  L +L PL+V  +FGV  +SG            L G +V+G+ +AIS ++ GGAWDNAKK  E G  +       KGSE HKA+V GDT+GDP KDT+GP++N  IK+
Sbjct:   20 LSYFAANGDKYPYFANIGEISFDLSNPYVVAGLIFGGLIPYLFGGIAMTAVGRAAGSIVEEVRRQFKEKPGIMQGKDKPNYGRAVDLLTKAAIREMIVPSLLPVLAPLVV--YFGVLLISGSKASAFAALGASLLGVIVNGLFVAISMTSGGGAWDNAKKSFEDGFVDKDGQRHMKGSEAHKASVTGDTVGDPYKDTAGPAVNPAIKI 225          
BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA_STRCO (Pyrophosphate-energized proton pump OS=Streptomyces coelicolor GN=hppA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.258e-38
Identity = 78/186 (41.94%), Postives = 118/186 (63.44%), Query Frame = 2
Query:   56 VDVLTPKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAP 613
            +D+  P   +GLI  A + + FS + + +V  +A  +V EVRRQF   PG+M+ + KP+Y   V I T  +++E+  PG L ++ P+ +G   GV  L   LAG++ +G  +A+  +N+GG+WDNAKK +E G        G KGSE H A VIGDT+GDP KDT+GP++N L+K+M + +L+ AP
Sbjct:  555 MDISQPNNLVGLIAGAAVVFLFSGLAINAVSRSAGAVVYEVRRQFRERPGIMDYSEKPEYGKVVDICTRDALRELATPGLLAVMAPIFIGFTLGVGALGAFLAGAIGAGTLMAVFLANSGGSWDNAKKLVEDGHH------GGKGSEAHAATVIGDTVGDPFKDTAGPAINPLLKVMNLVALLIAP 734          
BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA_HELCL (Pyrophosphate-energized proton pump (Fragment) OS=Heliobacterium chlorum GN=hppA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 79/156 (50.64%), Postives = 105/156 (67.31%), Query Frame = 2
Query:    2 LVSLALFAAF----VSRAGITT--------VDVLTPKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNA 433
            L +LALF AF    V   G+++        +++L PK+ IGL +   +P+ F A  M++VG AA +M+ EVRRQF  IPGLMEG  KPDYA CV IST A+I++MI PG L ++TPLIVG  FG + L G+LAG  V+GV +AI  +N GGAWD+A
Sbjct:   42 LTALALFTAFAEEVVKSPGVSSALHGSHFVLNLLEPKIIIGLFIGGTVPFLFCAFAMEAVGKAAFEMIGEVRRQFREIPGLMEGKAKPDYARCVDISTRAAIRQMIAPGLLAVITPLIVGFGFGAQALGGMLAGVTVAGVLLAIFMANAGGAWDHA 197          
BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA_RHIRD (Pyrophosphate-energized proton pump (Fragment) OS=Rhizobium radiobacter GN=hppA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 69/144 (47.92%), Postives = 88/144 (61.11%), Query Frame = 2
Query:    2 LVSLALFAAFVSRA------------GITTVDVLTPKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAI 397
            L +LALF AF                G   V++  P V IG+ + A LP+   A TM++VG AA +M+EEVRRQF  IPG+MEGT +PDYA CV IST A+I+EM+ PG   +  PLIVG   G + L+G LAG   SGV +AI
Sbjct:   42 LTALALFTAFAEEIAKNPKLTGLLVDGHLVVNLTEPGVIIGIFLGATLPFLVCAFTMEAVGKAAFEMIEEVRRQFREIPGIMEGTGRPDYAKCVDISTKAAIREMMLPGVFAVGAPLIVGFLLGAKALAGFLAGVTASGVLLAI 185          
BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA_CHRVI (Pyrophosphate-energized proton pump (Fragment) OS=Chromatium vinosum GN=hppA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 71/156 (45.51%), Postives = 94/156 (60.26%), Query Frame = 2
Query:    2 LVSLALFAAFVSR---AGITTVDVLT-PKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF--------GVETLSGVLAGSLVSGVQIAISASNTGGAWDNA 433
            L +L LFA +      AG   V  L+ P V IGL +  ++PY F AM M++VG AA  +V EVRRQF  I G+MEGT KPDY+  V + T A+IKEM+ P  L +L P+ V I          G+  L G+L G++V+G+ +AIS    GGAWDNA
Sbjct:   42 LAALVLFADYTHNLEVAGKMQVFSLSDPAVIIGLFIGGLVPYLFGAMAMEAVGRAAGSVVIEVRRQFREIKGIMEGTAKPDYSRAVDLLTKAAIKEMVVPSLLPILVPVAVAIGMNILMGDGAGIRALGGMLIGTIVTGLFVAISMCTGGGAWDNA 197          
BLAST of FC868507 vs. ExPASy Swiss-Prot
Match: HPPA_CHLTE (Pyrophosphate-energized proton pump OS=Chlorobium tepidum GN=hppA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 67/217 (30.88%), Postives = 104/217 (47.93%), Query Frame = 2
Query:    5 VSLALFAAFVSRAGITTVDVLTPKVFIGLIVEAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLS--------GVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIK------LMAVESLVFAP 613
            + + L         I  + +L P   +GL++   + YWF+  +M +V + A   V  +++    + G+ + +T+ D    V+I T  + K MI          L + IFF     +        G L    + G+  AI  +N GGAWDNAKK +E         L  KG+E H A+V+GDT+GDP KDTS  +LN +IK      L+A+E  +  P
Sbjct:  519 IIMILTGGLADTGAIAKLSILWPPFLLGLLMGGAVIYWFTGASMNAVTTGAYYAVAFIKKNIK-LDGVTKASTE-DSKKVVEICTRFAQKGMIN---------LFLTIFFSTLAFACLESYLFIGYLISIALFGLYQAIFMANAGGAWDNAKKVVET-------ELHAKGTELHDASVVGDTVGDPFKDTSSVALNPIIKFTTLFGLLAIELAIKLP 717          
The following BLAST results are available for this feature:
BLAST of FC868507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
HPPA_BRUME4.334e-3942.08Pyrophosphate-energized proton pump OS=Brucella me... [more]
HPPA_OCHA45.660e-3942.53Pyrophosphate-energized proton pump OS=Ochrobactru... [more]
HPPA_AGRT57.392e-3943.14Pyrophosphate-energized proton pump OS=Agrobacteri... [more]
HPPA_STRAW1.647e-3843.01Pyrophosphate-energized proton pump OS=Streptomyce... [more]
HPPA1_MYCDI1.647e-3844.23Pyrophosphate-energized proton pump 1 (Fragment) O... [more]
HPPA_STRCO6.258e-3841.94Pyrophosphate-energized proton pump OS=Streptomyce... [more]
HPPA_HELCL4.485e-3650.64Pyrophosphate-energized proton pump (Fragment) OS=... [more]
HPPA_RHIRD1.545e-2847.92Pyrophosphate-energized proton pump (Fragment) OS=... [more]
HPPA_CHRVI6.491e-2745.51Pyrophosphate-energized proton pump (Fragment) OS=... [more]
HPPA_CHLTE1.893e-1830.88Pyrophosphate-energized proton pump OS=Chlorobium ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001C04EF AbioticL1 Citrus clementina cDNA clone C31001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868507 ID=FC868507; Name=FC868507; organism=Citrus clementina; type=EST; length=704bp
GTTGGTGTCTTTGGCTCTATTTGCTGCTTTTGTGAGCCGTGCTGGAATTA
CAACTGTTGATGTTTTGACCCCCAAGGTCTTCATTGGTCTGATTGTTGAG
GCCATGCTTCCTTACTGGTTCTCAGCCATGACAATGAAGAGTGTGGGAAG
TGCAGCTTTGAAGATGGTTGAGGAAGTCCGCAGACAGTTCAACACCATTC
CAGGTCTCATGGAGGGCACTACCAAGCCTGATTACGCTACCTGTGTTAAG
ATCTCAACCGATGCATCCATCAAGGAGATGATTCCTCCTGGTGCTCTTGT
CATGCTCACACCCCTCATTGTTGGAATCTTCTTTGGTGTGGAAACCCTTT
CTGGTGTGCTCGCTGGCTCCCTTGTTTCGGGTGTTCAGATAGCAATATCT
GCCTCCAACACTGGCGGTGCATGGGATAATGCCAAGAAATATATTGAGGC
TGGTGCCTCAGAGCATGCAAGGACCCTTGGCCCAAAGGGTTCTGAGCCAC
ACAAGGCAGCTGTGATTGGTGATACCATTGGAGATCCACTGAAGGATACG
TCAGGCCCATCTCTAAACATCCTCATCAAACTCATGGCCGTTGAATCACT
GGTGTTTGCTCCTTTCTTTGCCACCCACGGTGGNCTGCTTTTCAAGATCT
TCTGAAGAAGAGATAATGTGAAATACATTGCGGAAGAAGGTCATTGACTT
TTGC
back to top