FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.479e-57
Identity = 116/215 (53.95%), Postives = 145/215 (67.44%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            G+DEREQTLNQLL EMDGF  N GII+IAATNRADILD ALLRPGRFDRQ+TVD PD+ GR  +LKVH  NK  D  V+L  IAMRTPGFSG               R+ K  I +++ID++ DR++AG  + + +   K +++VAYHE GH + G +    D V KVT+VPRGQA G    +P +D    +K +L  +IVG LGGR AEE+IFG
Sbjct:  276 GHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNLKSIAMRTPGFSGADLENLLNEAALVAARQNKKKIDARDIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLDEADMVHKVTIVPRGQAGGYAVMLPREDRYFQTKPELLDKIVGLLGGRVAEEIIFG 490          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.136e-56
Identity = 116/221 (52.49%), Postives = 145/221 (65.61%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            G+DEREQTLNQ+L EMDGFEGN GIIVIAATNR D+LD ALLRPGRFDRQV V +PD+RGR +ILKVH        D+   +IA  TPGFSG               R  K  +S  E + + D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+
Sbjct:  267 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVS 486          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.136e-56
Identity = 116/221 (52.49%), Postives = 145/221 (65.61%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            G+DEREQTLNQ+L EMDGFEGN GIIVIAATNR D+LD ALLRPGRFDRQV V +PD+RGR +ILKVH        D+   +IA  TPGFSG               R  K  +S  E + + D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+
Sbjct:  267 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVS 486          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.136e-56
Identity = 116/221 (52.49%), Postives = 145/221 (65.61%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            G+DEREQTLNQ+L EMDGFEGN GIIVIAATNR D+LD ALLRPGRFDRQV V +PD+RGR +ILKVH        D+   +IA  TPGFSG               R  K  +S  E + + D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+
Sbjct:  267 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVS 486          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.136e-56
Identity = 116/221 (52.49%), Postives = 145/221 (65.61%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            G+DEREQTLNQ+L EMDGFEGN GIIVIAATNR D+LD ALLRPGRFDRQV V +PD+RGR +ILKVH        D+   +IA  TPGFSG               R  K  +S  E + + D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+
Sbjct:  267 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVS 486          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.136e-56
Identity = 116/221 (52.49%), Postives = 145/221 (65.61%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            G+DEREQTLNQ+L EMDGFEGN GIIVIAATNR D+LD ALLRPGRFDRQV V +PD+RGR +ILKVH        D+   +IA  TPGFSG               R  K  +S  E + + D+I+ G E    VMT+ + +S  AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D    S+Q+L ++I    GGR AEE+I+G   V+
Sbjct:  267 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES-TAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVS 486          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.136e-56
Identity = 113/220 (51.36%), Postives = 147/220 (66.82%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            G+DEREQTLNQLL EMDGF+ + GIIVIAATNR DILD ALLRPGRFDRQ+ +  PD+RGR EILKVH  NKK   DV L+ +A  TPGF+G               R+GK  I+ +EI++++DRI  G+E   MT   K K  +A HE GHA+ G ++   D V K++++PRG A G+T  +P +D  +  K+ L+ +I+  LGGRAAEEV FG   +T
Sbjct:  271 GHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAALLAARKGKEEITMEEIEEALDRITMGLERKGMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGIT 490          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.028e-55
Identity = 112/214 (52.34%), Postives = 140/214 (65.42%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIF 640
            GNDEREQTLNQLL EMDGFEGN GIIVIAATNR+D+LD ALLRPGRFDR+V V  PD++GR  ILKVH  NK    DV L ++A +TPGF G               RR K+ I + +ID++ DR++AG      T   K + LVAYHE GH I G +      V KVT+VPRG+A G    +P +D  L+SK+ +  ++ G +GGR AEE+IF
Sbjct:  302 GNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDEAEDRVIAGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARVVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIF 515          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 4.028e-55
Identity = 112/214 (52.34%), Postives = 140/214 (65.42%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMT-DGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIF 640
            GNDEREQTLNQLL EMDGFEGN GIIVIAATNR+D+LD ALLRPGRFDR+V V  PD++GR  ILKVH  NK    DV L ++A +TPGF G               RR K+ I + +ID++ DR++AG      T   K + LVAYHE GH I G +      V KVT+VPRG+A G    +P +D  L+SK+ +  ++ G +GGR AEE+IF
Sbjct:  302 GNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDEAEDRVIAGPSKKDKTVSQKERELVAYHEAGHTIVGLVLSNARVVHKVTIVPRGRAGGYMIALPKEDQMLLSKEDMKEQLAGLMGGRVAEEIIF 515          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAI (Cell division protease ftsH OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ftsH PE=3 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 8.974e-55
Identity = 114/221 (51.58%), Postives = 144/221 (65.16%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            G+DEREQTLNQ+L EMDGF+GN GII+IAATNR D+LD ALLRPGRFDRQV V +PDIRGR +ILKVH        DV   +IA  TPGFSG               R  K  +S  E + + D+++ G E    VM+D + +S  AYHE GH I G L P HDP  KVT++PRG+A G+T+F+P  D   IS+Q+L ++I    GGR AEE+I+G   V+
Sbjct:  267 GHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQVIVALPDIRGREQILKVHMRKVPLSKDVDPMIIARGTPGFSGADLANLVNEAALFAARLDKRVVSMLEFERAKDKMMMGSERRSMVMSDFQKES-TAYHEAGHVIIGRLVPDHDPAHKVTIIPRGRALGVTFFLPESDTLSISRQKLESQISTLYGGRLAEEIIYGAKNVS 486          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
FTSH_BACSU1.479e-5753.95Cell division protease ftsH homolog OS=Bacillus su... [more]
FTSH_SHIFL2.136e-5652.49Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_SALTY2.136e-5652.49Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI2.136e-5652.49Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_ECOLI2.136e-5652.49Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO572.136e-5652.49Cell division protease ftsH OS=Escherichia coli O1... [more]
FTSH_AQUAE2.136e-5651.36Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH_STRR64.028e-5552.34Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN4.028e-5552.34Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_BUCAI8.974e-5551.58Cell division protease ftsH OS=Buchnera aphidicola... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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