FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 43/125 (34.40%), Postives = 61/125 (48.80%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV-DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIV 382
            E ++ L +LLT+MDGF+    + VI ATNRAD LD ALLRPGR DR++      D R R  + +   +      +V LD   MR    SG               R+ +  I   +I+++  R V
Sbjct:  253 EVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAV 377          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE---ILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E ++ L +LL +MDGFE ++ + VI ATNRAD LD ALLRPGR DR+  ++ P +R R E   I     S      +V LD + +R    SG
Sbjct:  285 EVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRK--IEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSG 374          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E ++ L +LL +MDGF+  T + VI ATNRAD LD ALLRPGR DR++   +PD R +  I     +      +V L+    R    SG
Sbjct:  281 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSG 369          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 41/88 (46.59%), Postives = 49/88 (55.68%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRT-PGFSG 277
            E+ LNQ L E+DG E    + VI ATNR D++D A LRPGRF   + V +P+   R  ILK     K  D  V LD IA     GFSG
Sbjct:  646 ERLLNQFLVELDGGE-RRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSG 732          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: RIX7_YEAST (Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae GN=RIX7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 2
Query:    2 GNDERE---QTLNQLLTEMDGF--EGNTG--IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            G  +RE   + + QLLT MD    E   G  +I+I ATNR D LD+AL R GRFDR++ ++VP+   R  ILK    N K D  +    +A  TPGF G
Sbjct:  316 GGAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLKIDGAIDFAKLAKLTPGFVG 414          

HSP 2 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 2
Query:    5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV----HGSNKKFDADVSLDVIAMRTPGFSG 277
            ++   + +N LLTE+DG     GI VI ATNR D++D A+LRPGR D+ + +++P+   + +I+K     HG+    D D    +   +   FSG
Sbjct:  647 SESSSRVVNTLLTELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEKCNNFSG 741          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 2
Query:   11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277
            E ++ L +LL +MDGF+ +  + VI ATNR D LD ALLRPGR DR++   +PD R +  I +V  S      +V L+    R    SG
Sbjct:  269 EVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSG 357          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
PRS6B_SCHPO2.734e-1134.4026S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS6B_ASPNG2.734e-1143.4826S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS6B_MANSE3.570e-1141.5726S protease regulatory subunit 6B OS=Manduca sext... [more]
CD48C_ARATH3.570e-1146.59Cell division control protein 48 homolog C OS=Arab... [more]
RIX7_YEAST4.663e-1143.43Ribosome biogenesis ATPase RIX7 OS=Saccharomyces c... [more]
PRS6B_DICDI7.954e-1141.5726S protease regulatory subunit 6B homolog OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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