FC868542
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11 Identity = 43/125 (34.40%), Postives = 61/125 (48.80%), Query Frame = 2 Query: 11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV-DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIV 382 E ++ L +LLT+MDGF+ + VI ATNRAD LD ALLRPGR DR++ D R R + + + +V LD MR SG R+ + I +I+++ R V Sbjct: 253 EVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAV 377
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11 Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 2 Query: 11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE---ILKVHGSNKKFDADVSLDVIAMRTPGFSG 277 E ++ L +LL +MDGFE ++ + VI ATNRAD LD ALLRPGR DR+ ++ P +R R E I S +V LD + +R SG Sbjct: 285 EVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRK--IEFPSLRDRRERRLIFSTIASKMSLSPEVDLDSLIVRNEPLSG 374
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 2 Query: 11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277 E ++ L +LL +MDGF+ T + VI ATNRAD LD ALLRPGR DR++ +PD R + I + +V L+ R SG Sbjct: 281 EVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSG 369
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 41/88 (46.59%), Postives = 49/88 (55.68%), Query Frame = 2 Query: 17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRT-PGFSG 277 E+ LNQ L E+DG E + VI ATNR D++D A LRPGRF + V +P+ R ILK K D V LD IA GFSG Sbjct: 646 ERLLNQFLVELDGGE-RRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSG 732
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: RIX7_YEAST (Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae GN=RIX7 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11 Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 2 Query: 2 GNDERE---QTLNQLLTEMDGF--EGNTG--IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277 G +RE + + QLLT MD E G +I+I ATNR D LD+AL R GRFDR++ ++VP+ R ILK N K D + +A TPGF G Sbjct: 316 GGAQREMERRIVAQLLTSMDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDNLKIDGAIDFAKLAKLTPGFVG 414 HSP 2 Score: 68.1662 bits (165), Expect = 4.663e-11 Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 2 Query: 5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV----HGSNKKFDADVSLDVIAMRTPGFSG 277 ++ + +N LLTE+DG GI VI ATNR D++D A+LRPGR D+ + +++P+ + +I+K HG+ D D + + FSG Sbjct: 647 SESSSRVVNTLLTELDGLNDRRGIFVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLDIIKTLTKSHGTPLSSDVDFEEIIRNEKCNNFSG 741
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11 Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 2 Query: 11 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 277 E ++ L +LL +MDGF+ + + VI ATNR D LD ALLRPGR DR++ +PD R + I +V S +V L+ R SG Sbjct: 269 EVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSG 357 The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 256
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bpback to top |