FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.172e-54
Identity = 111/215 (51.63%), Postives = 139/215 (64.65%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            G+DEREQTLNQLL EMDGF  N GII+IAATNRADILD ALLRPGRFDRQ+ V+ PD+ GR E+LKVH  NK  + DV+L  IA RTPGFSG               R     IS   I+++IDR++AG  + + +   K K +VA+HE GH + G      D V KVT+VPRG A G    +P +D   +++ +L  +I+G LGGR AEEV FG
Sbjct:  281 GHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIATRTPGFSGADLENLLNEAALVAARHDHTKISMIHIEEAIDRVIAGPAKKSRVISPKEKKIVAWHEAGHTVVGVKLENADMVHKVTIVPRGMAGGYAVMLPKEDRYFMTQPELLDKIIGLLGGRVAEEVTFG 495          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_BUCAP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ftsH PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.454e-54
Identity = 112/221 (50.68%), Postives = 142/221 (64.25%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            G+DEREQTLNQ+L EMDGF+GN G+I+IAATNR D+LD ALLRPGRFDRQV V +PD+RGR +ILKVH        DV   +IA  TPGFSG               R     +S    + + D+I+ G E    VM+D + +S  AYHE GH I G L P HDP  KVT++PRGQA G+T+F+P  D   IS+Q+L ++I    GGR AEE+I+G   V+
Sbjct:  267 GHDEREQTLNQMLVEMDGFDGNEGVILIAATNRPDVLDPALLRPGRFDRQVIVALPDVRGRKQILKVHMRKVPLSEDVDPMIIARGTPGFSGADLANLVNEAALFAARFNNRVVSMIHFEKAKDKIMMGSERRSMVMSDFQKES-TAYHEAGHVIIGRLVPDHDPAHKVTIIPRGQALGITFFLPESDILSISRQKLESQISTLYGGRLAEEIIYGSQNVS 486          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.097e-52
Identity = 108/216 (50.00%), Postives = 139/216 (64.35%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            G+DEREQTLNQ+L EMDGF+GN GII+IAATNR D+LD ALLRPGRFDRQ+ V +PDIRGR +I++VH        +V   +IA  TPGFSG               R  +  +   + + + D+I  G E    VMT+ K K   AYHE GH I G L P HDP  KVT++PRG+A G+T+F+P DD   I+K +L ++I    GGR AEE+I+G
Sbjct:  267 GHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQIFVALPDIRGREKIIQVHMKKVPLGNNVDPMIIARGTPGFSGADLANLVNEAALFAARNNRDVVMMSDFESAKDKITMGSERRSMVMTE-KQKESTAYHEAGHVIVGRLVPEHDPAHKVTIIPRGRALGVTFFLPKDDVLSINKNKLESQISTLYGGRLAEEIIYG 481          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH2_HAEIN (Cell division protease ftsH homolog 2 OS=Haemophilus influenzae GN=ftsH-B PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.445e-52
Identity = 108/221 (48.87%), Postives = 140/221 (63.35%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            G+DEREQTLNQ+L EMDGF GN G+IVIAATNR D+LD AL RPGRFDRQV V +PD++GR +ILKVH        DV    +A  TPG+SG               R  K  ++  E + + D+I  G E    +MTD K K   AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D   IS++QL +++     GR AE++I+G   ++
Sbjct:   12 GHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEKAKDKINMGPERRTMIMTD-KQKESTAYHEAGHAIVGYLVPEHDPVHKVTIIPRGRALGVTFFLPEGDQISISQKQLESKLSTLYAGRLAEDLIYGEENIS 231          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.445e-52
Identity = 108/221 (48.87%), Postives = 140/221 (63.35%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            G+DEREQTLNQ+L EMDGF GN G+IVIAATNR D+LD AL RPGRFDRQV V +PD++GR +ILKVH        DV    +A  TPG+SG               R  K  ++  E + + D+I  G E    +MTD K K   AYHE GHAI G L P HDPV KVT++PRG+A G+T+F+P  D   IS++QL +++     GR AE++I+G   ++
Sbjct:  266 GHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEFEKAKDKINMGPERRTMIMTD-KQKESTAYHEAGHAIVGYLVPEHDPVHKVTIIPRGRALGVTFFLPEGDQISISQKQLESKLSTLYAGRLAEDLIYGEENIS 485          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.027e-50
Identity = 101/221 (45.70%), Postives = 141/221 (63.80%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            GNDEREQTLNQ+L EMDGFE N G+++IAATNR D+LD+ALLRPGRFDRQ+TV  PDI GR +IL+VH    K+   +   +IA  TPGFSG               RR K  +   +++++ D+++ G+E    +M+D + K L AYHE GHA+ G      DP+ K T++PRG+A G+   +P +D   + + ++ A I   + GR AEE+IFG  +VT
Sbjct:  270 GNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDNALLRPGRFDRQITVSNPDIDGREKILQVHLKKVKYSTKIVPRIIARGTPGFSGAELANLVNEATLIAARRNKKEVEMHDLEEAKDKVMMGVERRSMIMSD-EQKKLTAYHEGGHALVGLYCLASDPIHKATIIPRGRALGMVMRLPENDRFSMPRDKMEADIAVAMAGRVAEEIIFGKEKVT 489          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.751e-50
Identity = 107/217 (49.31%), Postives = 139/217 (64.06%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            EQTLNQLL EMDGF   TG++V+AATNR D+LD ALLRPGRFDR + +++PDI+ R  ILKVH  NK   + +SL  +A RTPGFSG               R  +  I+  +ID++IDR++AG   +  V++D + + LVAYHE GHA+ G     +D VQK+T++PRGQA G T   P S D  L  K  L A I   +GGRAAEE I+G  E+T
Sbjct:  351 EQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAENKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTININDIDEAIDRVIAGPAKKSRVISD-EDRKLVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGNLEIT 566          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.287e-50
Identity = 101/215 (46.98%), Postives = 141/215 (65.58%), Query Frame = 2
Query:    5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRG-QARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            NDEREQTLNQLL EMDGF+  TG+I++AATNR D+LD ALLRPGRFDRQV VD PD++GR  IL++H  N K   +V L  +A  T G+SG               R G+A +   ++D+++++ + G++  + +   + + ++AYHE GHA+ GT T G D V K+T++PRG  A G T+ IP DD  ++++QQL A +   L GRAAE V FG
Sbjct:  256 NDEREQTLNQLLVEMDGFDNTTGLILLAATNRPDVLDPALLRPGRFDRQVCVDRPDLKGREAILRIHAQNVKLAPEVDLKAVARITGGYSGADLANVVNEAALLAVRSGRAQVIETDLDEAVEKTMIGLQKKSRVIREEERRIIAYHETGHALAGTFTKGADKVHKITIIPRGTSALGYTFHIPEDDRHIVTEQQLLAEVDVLLSGRAAEFVAFG 470          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.656e-50
Identity = 100/220 (45.45%), Postives = 137/220 (62.27%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            GNDEREQTLNQ+L EMDGFE N G+++IAATNR D+LD ALLRPGRFDRQ+ V  PDI GR +ILKVH    K+++ V   +IA  TPGFSG               R GK  +   +++++ D+++ G +  ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT
Sbjct:  270 GNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGKNKVT 489          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.656e-50
Identity = 100/220 (45.45%), Postives = 137/220 (62.27%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            GNDEREQTLNQ+L EMDGFE N G+++IAATNR D+LD ALLRPGRFDRQ+ V  PDI GR +ILKVH    K+++ V   +IA  TPGFSG               R GK  +   +++++ D+++ G +  ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT
Sbjct:  270 GNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVVRRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVT 489          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
FTSH_BACPF1.172e-5451.63Cell division protease ftsH homolog OS=Bacillus ps... [more]
FTSH_BUCAP4.454e-5450.68Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_BUCBP1.097e-5250.00Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH2_HAEIN5.445e-5248.87Cell division protease ftsH homolog 2 OS=Haemophil... [more]
FTSH1_HAEIN5.445e-5248.87Cell division protease ftsH homolog 1 OS=Haemophil... [more]
FTSH_RICBR1.027e-5045.70Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_MYCGE1.751e-5049.31Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_TREPA2.287e-5046.98Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH_RICTY6.656e-5045.45Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR6.656e-5045.45Cell division protease ftsH homolog OS=Rickettsia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
back to top