FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.656e-50
Identity = 100/220 (45.45%), Postives = 137/220 (62.27%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            GNDEREQTLNQ+L EMDGFE N G+++IAATNR D+LD ALLRPGRFDRQ+ V  PDI GR +ILKVH    K+++ V   +IA  TPGFSG               R GK  +   +++++ D+++ G+   ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT
Sbjct:  270 GNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVARRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPIHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVT 489          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPU (Cell division protease ftsH homolog OS=Mycoplasma pulmonis GN=ftsH PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.656e-50
Identity = 102/221 (46.15%), Postives = 139/221 (62.90%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            GNDEREQTLNQ+L EMDG   N GI+++ ATNR D+LD ALLRPGRFDR +TV +PDI+ R EILK+H   K+   ++  D IA RTPG+SG               R     I S +ID++IDR++AG   +  V++  + K+ VAYHE GHA+ G    G + VQK+T++PRG A G     P ++    SK++L A I   +GGRAAE +I+G   ++
Sbjct:  327 GNDEREQTLNQILVEMDGINENAGILIMGATNRTDVLDPALLRPGRFDRIITVGLPDIKEREEILKLHSKGKRLSKEIKFDKIAKRTPGYSGAQLENVINEASLLSVREKTDVIISTQIDEAIDRVMAGPAKKSRVISQEELKA-VAYHEAGHAVVGLKVKGGNKVQKITIIPRGNAGGYNLMTPEEEKYNASKKELLATIASYMGGRAAEMIIYGKENIS 546          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.656e-50
Identity = 107/217 (49.31%), Postives = 138/217 (63.59%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            EQTLNQLL EMDGF   TG++V+AATNR D+LD ALLRPGRFDR + +++PDI+ R  IL+VH  NK   + +SL  +A RTPGFSG               R  +  I+  +ID++IDR++AG   +  V++D   K LVAYHE GHA+ G     +D VQK+T++PRGQA G T   P S D  L  K  L A I   +GGRAAEE I+G  E+T
Sbjct:  348 EQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTINMNDIDEAIDRVIAGPAKKSRVVSDADRK-LVAYHEAGHALVGLHVHSNDEVQKITIIPRGQAGGYTLSTPKSGDLNLKRKSDLLAMIATAMGGRAAEEEIYGPLEIT 563          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.135e-49
Identity = 100/220 (45.45%), Postives = 137/220 (62.27%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGM-EGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            GNDEREQTLNQ+L EMDGFE N G+++IAATNR D+LD ALLRPGRFDRQ+ V  PDI GR +ILKVH    K+++ V   +IA  TPGFSG               R GK  +   +++++ D+++ G+   ++    K K L AYHE GHA+ G   P   P+ K T++PRG A G+   +P  D    +++Q+ + I   + GR AEE+IFG  +VT
Sbjct:  270 GNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKVLMGVARRSIAMSEKEKRLTAYHEGGHALVGLYCPAASPLHKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVT 489          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.634e-49
Identity = 106/217 (48.85%), Postives = 144/217 (66.36%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIF 640
            GNDEREQTLNQLLTEMDGF      +IV+AATNR + LD ALLRPGRFDRQV VD PD+ GR +IL+++    K D +V L  IA RTPGF+G               R  + +++  +  ++I+R+VAG+E    V++D K K +VAYHEVGHA+ G + PG   V K+++VPRG A  G T  +P++D  L+++ +L  +I   LGGRAAEE++F
Sbjct:  290 GNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQDSVTEADFREAIERVVAGLEKKSRVLSD-KEKKIVAYHEVGHALVGAVMPGGGQVAKISIVPRGMAALGYTLQMPTEDRFLLNESELRDQIATLLGGRAAEEIVF 505          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.367e-47
Identity = 103/215 (47.91%), Postives = 133/215 (61.86%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            ++TL+QLL EMDGFE N GIIV+AATN  DILD AL RPGRFDR + V  PD+RGR EIL+++   K    DV +  IA  TPGF+G                 G   +SS++++ + DRIV G E  T+     SK L AYHE GHAI    T G  P+ K T++PRG A G+   +PS+D T +SK+QL AR+   +GGR AEE+IFG   +T
Sbjct:  478 KKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLSSEQLEFAKDRIVMGTERKTMFVSEDSKKLTAYHESGHAIVALNTKGAHPIHKATIMPRGSALGMVTQLPSNDETSVSKRQLLARLDVCMGGRVAEELIFGLDHIT 692          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTU (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis GN=ftsH PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.464e-46
Identity = 93/218 (42.66%), Postives = 134/218 (61.47%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGP 649
            G+DEREQTLNQLL EMDGF    G+I+IAATNR DILD ALLRPGRFDRQ+ V  PD+ GR  +L+VH   K   AD  LD +A RT G +G               R     I+   +++++DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P
Sbjct:  278 GHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP 494          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_MYCTA (Cell division protease ftsH homolog OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ftsH PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.464e-46
Identity = 93/218 (42.66%), Postives = 134/218 (61.47%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGP 649
            G+DEREQTLNQLL EMDGF    G+I+IAATNR DILD ALLRPGRFDRQ+ V  PD+ GR  +L+VH   K   AD  LD +A RT G +G               R     I+   +++++DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P
Sbjct:  278 GHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP 494          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_MYCBO (Cell division protease ftsH homolog OS=Mycobacterium bovis GN=ftsH PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.464e-46
Identity = 93/218 (42.66%), Postives = 134/218 (61.47%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGP 649
            G+DEREQTLNQLL EMDGF    G+I+IAATNR DILD ALLRPGRFDRQ+ V  PD+ GR  +L+VH   K   AD  LD +A RT G +G               R     I+   +++++DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P
Sbjct:  278 GHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPMAADADLDGLAKRTVGMTGADLANVINEAALLTARENGTVITGPALEEAVDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP 494          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.894e-45
Identity = 92/218 (42.20%), Postives = 133/218 (61.01%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG--MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGP 649
            G+DEREQTLNQLL EMDGF    G+I+IAATNR DILD ALLRPGRFDRQ+ V  PD+ GR  +L+VH   K    D  LD +A RT G +G               R     I+   +++++DR++ G   +G ++++ + K + AYHE GH +     P  +P+ KVT++ RG+  G    +P +D  L ++ ++ A++V  +GGRAAEE++F  P
Sbjct:  278 GHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPIADDADLDGLAKRTVGMTGADLANVVNEAALLTARENGLVITGPALEEAVDRVIGGPRRKGRIISE-QEKKITAYHEGGHTLAAWAMPDIEPIYKVTILARGRTGGHAVAVPEEDKGLRTRSEMIAQLVFAMGGRAAEELVFREP 494          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
FTSH_RICCN6.656e-5045.45Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_MYCPU6.656e-5046.15Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_MYCPN6.656e-5049.31Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH_RICFE1.135e-4945.45Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH3_SYNY35.634e-4948.85Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSHB_ARATH2.367e-4747.91Cell division protease ftsH homolog 11, chloroplas... [more]
FTSH_MYCTU4.464e-4642.66Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCTA4.464e-4642.66Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCBO4.464e-4642.66Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH_MYCLE2.894e-4542.20Cell division protease ftsH homolog OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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