FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.894e-45
Identity = 96/216 (44.44%), Postives = 134/216 (62.04%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAG-MEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            GNDEREQTLNQLL EMDGF+ +   +IVIAATNR+D+LD ALLRPGRFDR+V V  PD++GR  +LKVH  NK   +DV L  +A +TPG+ G               R+ K  I++ +ID+ +DR +AG  +   +   + + +VAYHE GHAI G +      V+KVT+VPRG+  G    +P ++    +   L  ++   +GGR  EE++FG
Sbjct:  308 GNDEREQTLNQLLVEMDGFQDDGNSVIVIAATNRSDVLDPALLRPGRFDRKVLVGAPDVKGREAVLKVHAKNKPLASDVDLHNVATQTPGYVGADLENVLNEAALVAARQNKKEINAADIDEGMDRAMAGPAKKDRIQSMREREIVAYHEAGHAIVGLVLENGSTVRKVTVVPRGRIGGYMLALPDEEIMQPTNFHLQDQLASLMGGRLGEEIVFG 523          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.419e-45
Identity = 105/223 (47.09%), Postives = 139/223 (62.33%), Query Frame = 2
Query:    5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA--DVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGG 646
            NDEREQTLNQLLTEMDGF+ N+ +IV+ ATNRAD+LD AL RPGRFDR VTV+ PD  GR  IL+VH S K+     DV+L  IA  T GF+G              GR+ K  +   +   +++R +AG+E  +    G  K++VA HE GHA+ GT    L  G   V+K++++PR G A G T+  P S+D  L+   +L  R+V  LGGRAAEEV++ G
Sbjct:  442 NDEREQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLAGRKNKTNVEKIDFIQAVERSIAGIEKKSARLKGNEKAVVARHEAGHAVVGTAVANLLTGQPRVEKLSILPRTGGALGFTYIPPTSEDRYLLFIDELLGRLVTLLGGRAAEEVVYSG 664          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.100e-44
Identity = 102/214 (47.66%), Postives = 130/214 (60.75%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEV 634
            GNDEREQTLNQLL EMDGF   N  +IV+AATNR +ILD AL+RPGRFDRQV VD PD  GR EILKVH    K   DV+L  +A  T G +G              GR  +  +  + + ++++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAEEV
Sbjct:  286 GNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSTRVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEEV 499          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.876e-44
Identity = 103/214 (48.13%), Postives = 130/214 (60.75%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEV 634
            GNDEREQTLNQLL EMDGF   N  +IV+AATNR +ILD ALLRPGRFDRQV VD PD +GR EILKVH    K   DV L  IA  T G +G              GR  +  +  + + ++++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAE+V
Sbjct:  292 GNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKPDFKGRVEILKVHIKPVKLANDVDLQEIAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDV 505          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.450e-44
Identity = 105/223 (47.09%), Postives = 139/223 (62.33%), Query Frame = 2
Query:    5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA--DVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIPS-DDPTLISKQQLFARIVGGLGGRAAEEVIFGG 646
            NDEREQTLNQLLTEMDGF+ ++ +IV+ ATNRAD+LD AL RPGRFDR VTV+ PD  GR  ILKVH S K+     DV+L  IA  T GF+G              GR+ K  +   +   +++R +AG+E  T    G  K++VA HE GHA+ GT    L  G   V+K++++PR G A G T+  P+ +D  L+   +L  R+V  LGGRAAEEV++ G
Sbjct:  446 NDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDKIDFIHAVERSIAGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPRSGGALGFTYIPPTHEDRYLLFIDELHGRLVTLLGGRAAEEVVYSG 668          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.450e-44
Identity = 100/216 (46.30%), Postives = 132/216 (61.11%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            + TLNQLL E+DGF+ N GIIVIAATN  + LD AL+RPGRFDR + V  PD+ GR +IL+ H S      DV L +IA  TPGFSG                 G  A++  +++ + DRI+ G E    V++D +S+ L AYHE GHA+    T G  PV K T+VPRG A G+   +P  D T +S++Q+ AR+   +GGR AEE+IFG  EVT
Sbjct:  347 KMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYAKDRIMMGSERKSAVISD-ESRKLTAYHEGGHALVAIHTEGAHPVHKATIVPRGMALGMVAQLPDKDETSVSRKQMLARLDVCMGGRVAEELIFGDSEVT 561          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.178e-44
Identity = 101/214 (47.20%), Postives = 130/214 (60.75%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEV 634
            GNDEREQTLNQLL EMDGF   N  +IV+AATNR +ILD AL+RPGRFDRQV VD PD  GR EILKVH    K   DV+L  +A  T G +G              GR  +  +  + + ++++R +AG+E  +     K K +VAYHE GHA+   +T G   V KV+++PRG A  G T   P ++  L+ K +L A I   LGGRAAE+V
Sbjct:  286 GNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDV 499          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.178e-44
Identity = 98/218 (44.95%), Postives = 132/218 (60.55%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            GNDERE TLNQLL EMDGF    G++V+A TNR DILD ALLRPGRFDRQ+T+D PDI+GR +I +++    K D + S     +A  TPGF+G               R   A ++    D +IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAE+V+ G
Sbjct:  443 GNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFDSAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLIG 659          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.178e-44
Identity = 102/230 (44.35%), Postives = 135/230 (58.70%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVM--TDGKSKS--------------LVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            ++TL+QLL EMDGFE N GIIV+AATN  DILD AL RPGRFDR + V  PD+RGR EIL+++  +K   +DV ++ IA  TPGF+G                 G   +++ +++ + DRI+ G E   M  +D   K+              L AYHE GHAI    T G  P+ K T++PRG A G+   +PS D T ISK+QL AR+   +GGR AEE+IFG   VT
Sbjct:  444 KKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPVSSDVDVNAIARSTPGFNGADLANLVNIAAIKAAVEGADKLAAAQLEFAKDRIIMGTERKSMFISDESKKACLFKLLYFILRELILTAYHESGHAIVALNTQGAHPIHKATILPRGSALGMVTQLPSQDETSISKKQLLARLDVCMGGRVAEELIFGEDNVT 673          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.457e-44
Identity = 98/218 (44.95%), Postives = 132/218 (60.55%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            GNDERE TLNQLL EMDGF    G++V+A TNR DILD ALLRPGRFDRQ+T+D PDI+GR +I K++    K D + S     +A  TPGF+G               R   A ++    + +IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAE+V+ G
Sbjct:  437 GNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFESAIDRVIGGLEKKNRVISKLERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEQVLIG 653          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
FTSH_LACLA2.894e-4544.44Cell division protease ftsH homolog OS=Lactococcus... [more]
FTSH7_ARATH8.419e-4547.09Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH_HELPJ1.100e-4447.66Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELFE1.876e-4448.13Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH9_ARATH2.450e-4447.09Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH5_ORYSJ2.450e-4446.30Cell division protease ftsH homolog 5, mitochondri... [more]
FTSH_HELPY4.178e-4447.20Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSHA_ARATH4.178e-4444.95Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH9_ORYSJ4.178e-4444.35Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH3_ARATH5.457e-4444.95Cell division protease ftsH homolog 3, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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