FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.127e-44
Identity = 98/217 (45.16%), Postives = 133/217 (61.29%), Query Frame = 2
Query:    5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            NDERE TLNQLL EMDGF   +G++V+A TNR DILD ALLRPGRFDRQ+T+D PDI+GR +I +++    K D + S     +A  TPGF+G               R  +  I+ +  + +IDRI+ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+++  L++K+QLF      LGGRAAEEV+ G
Sbjct:  452 NDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFRIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEETQITMQHFESAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNEN-LLMTKEQLFDMTCMTLGGRAAEEVLIG 667          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.216e-43
Identity = 97/218 (44.50%), Postives = 133/218 (61.01%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGK-SKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQAR-GLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            G+DERE TLNQLL EMDGF   +G++V+A TNR DILD ALLRPGRFDRQ+++D PDI+GR +I +++    K D + S     +A  TPGF+G               R     I+ +  + +IDR++ G+E       K  +  VAYHE GHA+ G      +P+ KVT+VPRG A  G   ++P+D+  L++K+QLF      LGGRAAEEV+ G
Sbjct:  436 GHDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFRIYLKKLKLDKEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEGTLITMQHFESAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNDN-LLMTKEQLFDMTCMTLGGRAAEEVLIG 652          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.216e-43
Identity = 94/219 (42.92%), Postives = 129/219 (58.90%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            G  E+E TLNQLL EMDGF   T ++++A TNR DILD ALLRPGRFDRQ+ +  PDI+GR  I KVH    K D+ +  D +A +    TPGFSG               R    AI+ K  + +I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +K+QL  R+   LGGR +EE+ FG
Sbjct:  422 GQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFG 639          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.074e-43
Identity = 106/223 (47.53%), Postives = 136/223 (60.99%), Query Frame = 2
Query:    5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGT-VMTDGKSKSLVAYHEVGHAICGT----LTPGHDPVQKVTLVPR-GQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGG 646
            NDEREQTLNQLLTEMDGF+ N+ +IV+ ATNRAD+LD AL RPGRFDR V V+ PD  GR  ILKVH S K+     DV L  IA  T GF+G              GR  K  +   +   +++R +AG+E       G  K++VA HEVGHA+ GT    L PG   V+K++++PR G A G T+  P ++D  L+   +L  R+V  LGGRAAEEV+  G
Sbjct:  463 NDEREQTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESILKVHVSRKELPLGKDVDLSDIAAMTTGFTGADLANLVNEAALLAGRSNKEIVEKIDFICAVERSIAGIEKKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPTTEDRYLLFVDELRGRLVTLLGGRAAEEVVLSG 685          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.074e-43
Identity = 93/219 (42.47%), Postives = 129/219 (58.90%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            G  E+E TLNQLL EMDGF   T ++++A TNR DILD ALLRPGRFDRQ+ +  PDI+GR  I KVH    K D+ +  D +A +    TPGFSG               R    +I+ K  + +I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +K+QL  R+   LGGR +EE+ FG
Sbjct:  423 GQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQ-YLYTKEQLLDRMCMTLGGRVSEEIFFG 640          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.708e-43
Identity = 96/214 (44.86%), Postives = 131/214 (61.21%), Query Frame = 2
Query:   20 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            QT+NQLL EMDGF+ N G+I+I ATN  + LD+AL+RPGRFD QVTV  PD++GRTEILK + +  KFD  V  ++IA  T GFSG                 GK  ++ KE++ S D+I+ G E  +V  D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D    ++ QL A++   +GGR AEE+IFG   +T
Sbjct:  400 QTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 613          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.708e-43
Identity = 96/214 (44.86%), Postives = 131/214 (61.21%), Query Frame = 2
Query:   20 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            QT+NQLL EMDGF+ N G+I+I ATN  + LD+AL+RPGRFD QVTV  PD++GRTEILK + +  KFD  V  ++IA  T GFSG                 GK  ++ KE++ S D+I+ G E  +V  D K+K++ AYHE GHAI    T    P+ K T++PRG   G    +P +D    ++ QL A++   +GGR AEE+IFG   +T
Sbjct:  458 QTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHIT 671          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.344e-42
Identity = 89/219 (40.64%), Postives = 130/219 (59.36%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            G  E+E TLNQ+L EMDGF  +T ++V+A TNR DILD AL RPGRFDRQ+ +  PDI+GR+ I KVH    K D  +S D ++ +    TPGF+G               R    ++  +  + +I+R++ G+E  T +     K+ VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +++QLF R+   LGGR AE++ FG
Sbjct:  415 GQSEQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKGLGYAQYLPREQ-FLYTREQLFDRMCMMLGGRVAEQLFFG 632          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.756e-42
Identity = 97/216 (44.91%), Postives = 131/216 (60.65%), Query Frame = 2
Query:   17 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME--GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            + TLNQ+L E+DGF+ N GIIV+AATN  + LD AL+RPGRFDR + V  PD+ GR +IL+ H S      DV L +IA  TPGFSG                 G   ++  +++ + DRI+ G E    V++D +S+ L A+HE GHA+    T G  PV K T+VPRG A G+   +P  D T IS++Q+ AR+   +GGR AEE+IFG  EVT
Sbjct:  344 KMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVTMSDLEFAKDRIMMGSERKSAVISD-ESRKLTAFHEGGHALVAIHTEGALPVHKATIVPRGMALGMVSQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVT 558          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.994e-42
Identity = 90/219 (41.10%), Postives = 129/219 (58.90%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMR----TPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG 643
            G  E+E TLNQLL EMDGF   T ++++A TNR DILD AL+RPGRFDRQ+ +  PDI+GR  I KVH    K D+ +  + +A +    TPGFSG               R    +I+ K  + +I+R++ G+E  T +   + K  VAYHE GHA+ G      DP+ KV+++PRG+  G   ++P +   L +++QL  R+   LGGR +EE+ FG
Sbjct:  424 GQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPREQ-YLYTREQLLDRMCMTLGGRVSEEIFFG 641          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
FTSH8_ORYSJ7.127e-4445.16Cell division protease ftsH homolog 8, mitochondri... [more]
FTSH3_ORYSJ1.216e-4344.50Cell division protease ftsH homolog 3, mitochondri... [more]
AFG32_MOUSE1.216e-4342.92AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
FTSH7_ORYSJ2.074e-4347.53Cell division protease ftsH homolog 7, chloroplast... [more]
AFG32_HUMAN2.074e-4342.47AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
YMEL1_MOUSE2.708e-4344.86ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YMEL1_HUMAN2.708e-4344.86ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
AFG31_MOUSE1.344e-4240.64AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
FTSH4_ARATH1.756e-4244.91Cell division protease ftsH homolog 4, mitochondri... [more]
AFG32_BOVIN2.994e-4241.10AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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