FC868542

Overview
NameFC868542
Unique NameFC868542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:1150..1831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.261e-32
Identity = 80/218 (36.70%), Postives = 119/218 (54.59%), Query Frame = 2
Query:   20 QTLNQLLTEMDGFEGNTG----IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME-GTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVT 658
            QTLNQLL ++DGF  N      ++ I ATN  + LD AL RPGRFDR + V +PD+RGR  IL  H  +     DV L +IA  T GF+G               +    A+S ++++ S DRI+ G E  +     ++K + AYHE GHA+    T       K T++PRG + G+T  +P  D    ++++  A +   +GGRAAEE+++G  ++T
Sbjct:  385 QTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRDLEWSKDRILMGAERKSAFITPENKLMTAYHEGGHALVALFTKNAMRPYKATIMPRGSSLGMTISLPDMDKDSWTREEYLAMLDVTMGGRAAEELLYGKDKIT 602          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 85/215 (39.53%), Postives = 111/215 (51.63%), Query Frame = 2
Query:    5 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSL--DVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPR-GQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIF 640
            N E EQTLNQLL EMDG      +IV+A+TNRAD+LD+AL+RPGR DR V +D+P ++ R EI + H    K     S     +A  TPGFSG                  K+ I SKE                      + +VA+HE GHA+ G L    + V KV++ PR   A G +  +P D   L +K+QLF R+   LGGRAAE + F
Sbjct:  426 NTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGTAK---------------KSKILSKE---------------------EQRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQ-YLFTKEQLFERMCMALGGRAAEAISF 603          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.914e-21
Identity = 53/131 (40.46%), Postives = 78/131 (59.54%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGME 394
            G+ E ++T+ QLL E+DGF+    + VIAATNR D++D A+LRPGRFDR + V +P +RGR EIL +H    K   DV L+ IA  T GFSG               RRG   I+  ++  +++++ A ++
Sbjct:  255 GDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDDMIKAVEKVKAALD 385          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: FTSHC_ARATH (Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.491e-21
Identity = 69/233 (29.61%), Postives = 107/233 (45.92%), Query Frame = 2
Query:   14 REQTLNQLLTEMDGFEGNTGI---------IVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDG-----------KSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPT---LISKQQLFARIVGGLGGRAAEEVIFG 643
            R  T   L+ ++DG +  TGI         I I ATNR D LD   +R GR DR++ + +PD + R +I  VH + K    D+    +  RT GFSG               R+G++ I  ++I D +D+ +    G ++T+            + K L+A HE GH +   L P  D      L+P G+   ++ F P +D       +   +  ++V   GGR AE V+FG
Sbjct:  607 RRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGRSYIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSYEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAVSVFYPREDMVDQGYTTFGYMKMQMVVAHGGRCAERVVFG 839          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRI 379
            G  E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +PD RGRTEI  ++    K + +++L++++  + GFSG               R G+  ++ K++ D+I +I
Sbjct:  250 GEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRI 379
            G  E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +PD RGRTEI  ++    K + +++L++++  + GFSG               R G+  ++ K++ D+I +I
Sbjct:  250 GEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRI 379
            G  E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +PD RGRTEI  ++    K + +++L++++  + GFSG               R G+  ++ K++ D+I +I
Sbjct:  250 GEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRI 379
            G  E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +PD RGRTEI  ++    K + +++L++++  + GFSG               R G+  ++ K++ D+I +I
Sbjct:  250 GEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 52/126 (41.27%), Postives = 77/126 (61.11%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRI 379
            G  E ++TL QLL E+DGF     + +IAATNR DILD ALLRPGRFDR + V +PD RGRTEI  ++    K + +++L++++  + GFSG               R G+  ++ K++ D+I +I
Sbjct:  250 GEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKI 375          
BLAST of FC868542 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 50/126 (39.68%), Postives = 78/126 (61.90%), Query Frame = 2
Query:    2 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGXXXXXXXXXXXXXXGRRGKAAISSKEIDDSIDRI 379
            G  E ++TL QLL E+DGF+    + +IAATNR DILD ALLRPGRFDR + V +PD +GRTEI  ++    K + +++L++++  T GFSG               R G+  ++  ++ ++I++I
Sbjct:  250 GEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRNKVTMNDLVEAINKI 375          
The following BLAST results are available for this feature:
BLAST of FC868542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
YME1_SCHPO1.261e-3236.70Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
SPG7_RAT1.884e-2839.53Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
PSMR_AERPE2.914e-2140.46Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
FTSHC_ARATH6.491e-2129.61Cell division protease ftsH homolog 12, chloroplas... [more]
PSMR_SULIY8.478e-2141.27Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM8.478e-2141.27Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL8.478e-2141.27Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK8.478e-2141.27Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA8.478e-2141.27Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULSO1.889e-2039.68Proteasome-activating nucleotidase OS=Sulfolobus s... [more]

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Properties
Property NameValue
Genbank descriptionC31001F12EF AbioticL1 Citrus clementina cDNA clone C31001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868542 ID=FC868542; Name=FC868542; organism=Citrus clementina; type=EST; length=681bp
AGGGAATGATGAAAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGG
ATGGTTTTGAGGGTAATACTGGTATCATTGTGATTGCTGCAACTAACAGG
GCGGACATTCTTGATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACA
GGTTACTGTTGATGTTCCTGACATTCGAGGAAGAACAGAGATATTAAAGG
TTCACGGTAGCAACAAGAAGTTTGATGCAGATGTGTCTCTTGATGTGATA
GCCATGAGAACACCTGGGTTCAGTGGTGCTGACCTTGCAAACCTCTTAAA
TGAGGCTGCTATATTGGCTGGACGACGTGGGAAAGCTGCTATTTCATCTA
AAGAGATTGATGATTCGATTGATAGGATTGTGGCTGGAATGGAAGGAACT
GTCATGACAGATGGGAAGAGTAAAAGTCTTGTTGCATACCATGAAGTTGG
CCACGCAATATGCGGAACTTTGACTCCTGGACACGATCCCGTTCAAAAAG
TCACCCTTGTTCCACGTGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCT
TCAGATGACCCCACCTTGATATCGAAGCAGCAGCTCTTTGCAAGAATTGT
TGGTGGACTCGGTGGTAGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTG
AAGTGACACAGGAGCAGCTGGTGATTTGCAG
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