FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:586..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.324e-75
Identity = 131/182 (71.98%), Postives = 150/182 (82.42%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DR F+DHP FL KVWGKT  KIYGP TG DY+DNQ+RF +LCQAALEAPRILNLN+N YF G YGEDVVFV NDWHT  +  YLK  Y+P G+Y++AKV FCIHNI+YQGRFAFED+  LNL  +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+E +SG   G ELDNI
Sbjct:  161 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNI 342          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 2.324e-75
Identity = 131/182 (71.98%), Postives = 150/182 (82.42%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DR F+DHP FL KVWGKT  KIYGP TG DY+DNQ+RF +LCQAALEAPRILNLN+N YF G YGEDVVFV NDWHT  +  YLK  Y+P G+Y++AKV FCIHNI+YQGRFAFED+  LNL  +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+E +SG   G ELDNI
Sbjct:  161 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNI 342          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.324e-75
Identity = 131/182 (71.98%), Postives = 150/182 (82.42%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DR F+DHP FL KVWGKT  KIYGP TG DY+DNQ+RF +LCQAALEAPRILNLN+N YF G YGEDVVFV NDWHT  +  YLK  Y+P G+Y++AKV FCIHNI+YQGRFAFED+  LNL  +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+E +SG   G ELDNI
Sbjct:  161 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNI 342          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 3.356e-74
Identity = 132/193 (68.39%), Postives = 154/193 (79.79%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPY-----------GEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DR FVDHP FL KV GKT+ KIYGP  G DY+DNQ RF +LCQAALE PRIL+LN+N +FSGPY           GEDVVFV NDWHT L+ CYLK+ Y+  G+Y++AKV FCIHNI+YQGRF+F+DF  LNLP +FKSSFDFIDGY+KPV GRKINWMKAGIL++D VLTVSP+YA+E +SGE  G ELDNI
Sbjct:  155 DRVFVDHPCFLEKVRGKTKEKIYGPDAGTDYEDNQQRFSLLCQAALEVPRILDLNNNPHFSGPYAMLCRAVPRRAGEDVVFVCNDWHTGLLACYLKSNYQSNGIYRTAKVAFCIHNISYQGRFSFDDFAQLNLPDRFKSSFDFIDGYDKPVEGRKINWMKAGILQADKVLTVSPYYAEELISGEARGCELDNI 347          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 5.724e-74
Identity = 131/182 (71.98%), Postives = 148/182 (81.32%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DR F+DHP FL KVWGKT  KIYGP TG DY+DNQ+RF +LCQ   EAPRILNLN+N YF G YGEDVVFV NDWHT  +P YLK  Y+P G+Y++AKV FCIHNI+YQGRFAFED+  LNL  +FKSSFDFIDGY+ PV GRKINWMKAGILESD VLTVSP+YA+E +SG   G ELDNI
Sbjct:  161 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQ---EAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLPSYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFKSSFDFIDGYDTPVEGRKINWMKAGILESDRVLTVSPYYAEELISGIARGCELDNI 339          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.521e-23
Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = 1
Query:    1 SRDREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            S D  FVDHP +           +YG   G  + DNQ R+ +LC AA EAP IL L    Y    YG+  +FV NDWH SL+P  L A Y+P G+Y+ A+ V  IHN+A+QG      +  L LP ++  + +++       +   +G  +N++K  ++ +D ++TVS  Y+ E  + E
Sbjct:  215 SVDWVFVDHPSY------HRPGNLYGDNFGA-FGDNQFRYTLLCYAACEAPLILELGG--YI---YGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAE 381          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.521e-23
Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = 1
Query:    1 SRDREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            S D  FVDHP +           +YG   G  + DNQ R+ +LC AA EAP IL L    Y    YG+  +FV NDWH SL+P  L A Y+P G+Y+ A+ V  IHN+A+QG      +  L LP ++  + +++       +   +G  +N++K  ++ +D ++TVS  Y+ E  + E
Sbjct:  215 SVDWVFVDHPSY------HRPGNLYGDNFGA-FGDNQFRYTLLCYAACEAPLILELGG--YI---YGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAE 381          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.748e-22
Identity = 66/173 (38.15%), Postives = 91/173 (52.60%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            D  F+D+P     ++   ++ IYG     D  D   R ++LC+AA+E P  +      Y  G    ++VF+ANDWHT+L+P YLKA Y   G    A+ V  IHNIA+QGR   +DF  L+LP  +   F   D    P  G  +N   AGI  +D +LTVS  YA E  + E
Sbjct:  336 DFVFIDNP-----IFHHVENDIYGG----DRTDILKRMVLLCKAAIEVPWYVPCGGYCYGDG----NLVFLANDWHTALLPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYD----PFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAE 491          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.748e-22
Identity = 60/177 (33.90%), Postives = 95/177 (53.67%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            D  FVDHP +           +YG   G  + DNQ R+ +LC AA EAP IL L    Y    YG++ +FV NDWH SL+P  L A Y+P G+Y+ ++    IHN+A+QG      +  L LP ++  + +++       +   +G  +N++K  ++ +D ++TVS  Y+ E  + E
Sbjct:  223 DWVFVDHPSY------HRPGSLYGDNFGA-FGDNQFRYTLLCYAACEAPLILELGG--YI---YGQNCMFVVNDWHASLVPVLLAAKYRPYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAE 387          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSJ (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.981e-22
Identity = 66/173 (38.15%), Postives = 89/173 (51.45%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            D  F+D P F  +     Q  IYG       Q+   R I+ C+AA+E P  +      Y  G    ++VF+ANDWHT+L+P YLKA Y+  GM +  + V  IHNIAYQGR   ++F  + LP  +   F   D    PV G   N   AG+  +D V+TVSP Y  E  + E
Sbjct:  397 DFVFIDAPLFRHR-----QDDIYGGNR----QEIMKRMILFCKAAVEVPWHVPCGGVPYGDG----NLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYD----PVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTE 552          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SSG1_ORYSJ2.324e-7571.98Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSI2.324e-7571.98Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYGL2.324e-7571.98Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT3.356e-7468.39Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA5.724e-7471.98Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSY1_ORYSJ3.521e-2335.20Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSI3.521e-2335.20Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY21_ORYSJ1.748e-2238.15Soluble starch synthase 2-1, chloroplastic/amylopl... [more]
SSY1_WHEAT1.748e-2233.90Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
SSY23_ORYSJ2.981e-2238.15Soluble starch synthase 2-3, chloroplastic/amylopl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
back to top