FC868546
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 2.324e-75 Identity = 131/182 (71.98%), Postives = 150/182 (82.42%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552 DR F+DHP FL KVWGKT KIYGP TG DY+DNQ+RF +LCQAALEAPRILNLN+N YF G YGEDVVFV NDWHT + YLK Y+P G+Y++AKV FCIHNI+YQGRFAFED+ LNL +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+E +SG G ELDNI Sbjct: 161 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNI 342
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2) HSP 1 Score: 281.182 bits (718), Expect = 2.324e-75 Identity = 131/182 (71.98%), Postives = 150/182 (82.42%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552 DR F+DHP FL KVWGKT KIYGP TG DY+DNQ+RF +LCQAALEAPRILNLN+N YF G YGEDVVFV NDWHT + YLK Y+P G+Y++AKV FCIHNI+YQGRFAFED+ LNL +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+E +SG G ELDNI Sbjct: 161 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNI 342
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 2.324e-75 Identity = 131/182 (71.98%), Postives = 150/182 (82.42%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552 DR F+DHP FL KVWGKT KIYGP TG DY+DNQ+RF +LCQAALEAPRILNLN+N YF G YGEDVVFV NDWHT + YLK Y+P G+Y++AKV FCIHNI+YQGRFAFED+ LNL +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+E +SG G ELDNI Sbjct: 161 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNI 342
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 3.356e-74 Identity = 132/193 (68.39%), Postives = 154/193 (79.79%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPY-----------GEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552 DR FVDHP FL KV GKT+ KIYGP G DY+DNQ RF +LCQAALE PRIL+LN+N +FSGPY GEDVVFV NDWHT L+ CYLK+ Y+ G+Y++AKV FCIHNI+YQGRF+F+DF LNLP +FKSSFDFIDGY+KPV GRKINWMKAGIL++D VLTVSP+YA+E +SGE G ELDNI Sbjct: 155 DRVFVDHPCFLEKVRGKTKEKIYGPDAGTDYEDNQQRFSLLCQAALEVPRILDLNNNPHFSGPYAMLCRAVPRRAGEDVVFVCNDWHTGLLACYLKSNYQSNGIYRTAKVAFCIHNISYQGRFSFDDFAQLNLPDRFKSSFDFIDGYDKPVEGRKINWMKAGILQADKVLTVSPYYAEELISGEARGCELDNI 347
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1) HSP 1 Score: 276.559 bits (706), Expect = 5.724e-74 Identity = 131/182 (71.98%), Postives = 148/182 (81.32%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552 DR F+DHP FL KVWGKT KIYGP TG DY+DNQ+RF +LCQ EAPRILNLN+N YF G YGEDVVFV NDWHT +P YLK Y+P G+Y++AKV FCIHNI+YQGRFAFED+ LNL +FKSSFDFIDGY+ PV GRKINWMKAGILESD VLTVSP+YA+E +SG G ELDNI Sbjct: 161 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQ---EAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLPSYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFKSSFDFIDGYDTPVEGRKINWMKAGILESDRVLTVSPYYAEELISGIARGCELDNI 339
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.521e-23 Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = 1 Query: 1 SRDREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525 S D FVDHP + +YG G + DNQ R+ +LC AA EAP IL L Y YG+ +FV NDWH SL+P L A Y+P G+Y+ A+ V IHN+A+QG + L LP ++ + +++ + +G +N++K ++ +D ++TVS Y+ E + E Sbjct: 215 SVDWVFVDHPSY------HRPGNLYGDNFGA-FGDNQFRYTLLCYAACEAPLILELGG--YI---YGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAE 381
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.521e-23 Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = 1 Query: 1 SRDREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525 S D FVDHP + +YG G + DNQ R+ +LC AA EAP IL L Y YG+ +FV NDWH SL+P L A Y+P G+Y+ A+ V IHN+A+QG + L LP ++ + +++ + +G +N++K ++ +D ++TVS Y+ E + E Sbjct: 215 SVDWVFVDHPSY------HRPGNLYGDNFGA-FGDNQFRYTLLCYAACEAPLILELGG--YI---YGQKCMFVVNDWHASLVPVLLAAKYRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAE 381
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 1.748e-22 Identity = 66/173 (38.15%), Postives = 91/173 (52.60%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525 D F+D+P ++ ++ IYG D D R ++LC+AA+E P + Y G ++VF+ANDWHT+L+P YLKA Y G A+ V IHNIA+QGR +DF L+LP + F D P G +N AGI +D +LTVS YA E + E Sbjct: 336 DFVFIDNP-----IFHHVENDIYGG----DRTDILKRMVLLCKAAIEVPWYVPCGGYCYGDG----NLVFLANDWHTALLPVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYD----PFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAE 491
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 1.748e-22 Identity = 60/177 (33.90%), Postives = 95/177 (53.67%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525 D FVDHP + +YG G + DNQ R+ +LC AA EAP IL L Y YG++ +FV NDWH SL+P L A Y+P G+Y+ ++ IHN+A+QG + L LP ++ + +++ + +G +N++K ++ +D ++TVS Y+ E + E Sbjct: 223 DWVFVDHPSY------HRPGSLYGDNFGA-FGDNQFRYTLLCYAACEAPLILELGG--YI---YGQNCMFVVNDWHASLVPVLLAAKYRPYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAE 387
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSJ (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.981e-22 Identity = 66/173 (38.15%), Postives = 89/173 (51.45%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525 D F+D P F + Q IYG Q+ R I+ C+AA+E P + Y G ++VF+ANDWHT+L+P YLKA Y+ GM + + V IHNIAYQGR ++F + LP + F D PV G N AG+ +D V+TVSP Y E + E Sbjct: 397 DFVFIDAPLFRHR-----QDDIYGGNR----QEIMKRMILFCKAAVEVPWHVPCGGVPYGDG----NLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYD----PVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTE 552 The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 135
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bpback to top |