FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:586..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_SALAR (Glycogen synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 47/138 (34.06%), Postives = 67/138 (48.55%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F  +    + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGCEMACGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAKHIDDIELP------WSFFNMHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_CLOK5 (Glycogen synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 48/152 (31.58%), Postives = 69/152 (45.39%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            Y D+  RF    +A L+    +N          Y  D++   NDWHT +IP   K  YK    Y+  K VF IHN+ +QG F     G L     F       +  +  + G  +++MK+GI  SD + TVS  YA E +   + G  LD +
Sbjct:  101 YYDDGERFAFFDRAVLDMLWQIN----------YKPDIIH-CNDWHTGMIPVLYKIQYKQSSFYRGVKFVFSIHNLLFQGNFDKNILGEL-----FNLDGSLYENGSVELNG-AVSFMKSGINYSDKISTVSRSYAFE-IQSPEYGENLDGL 234          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_CLOK1 (Glycogen synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 48/152 (31.58%), Postives = 69/152 (45.39%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            Y D+  RF    +A L+    +N          Y  D++   NDWHT +IP   K  YK    Y+  K VF IHN+ +QG F     G L     F       +  +  + G  +++MK+GI  SD + TVS  YA E +   + G  LD +
Sbjct:  101 YYDDGERFAFFDRAVLDMLWQIN----------YKPDIIH-CNDWHTGMIPVLYKIQYKQSSFYRGVKFVFSIHNLLFQGNFDKNILGEL-----FNLDGSLYENGSVELNG-AVSFMKSGINYSDKISTVSRSYAFE-IQSPEYGENLDGL 234          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_BACLD (Glycogen synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 51/171 (29.82%), Postives = 75/171 (43.86%), Query Frame = 1
Query:   16 FVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRF---AFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVS 519
            F+DH  +        +  +YG      + D+  RF    +A LEA   LN  ++           V   +DWHT ++   LK  Y+ K  Y+  K VF IHN+ +QG F   A  D   L++        +F            IN+MK GI+ +D V TVSP Y  E ++
Sbjct:   86 FLDHGYYF------NRDSLYG------HYDDGERFAFFSRAVLEALYALNFEAD-----------VIHTHDWHTGMVNYLLKEEYRKKPFYQHMKSVFTIHNLQFQGIFPKEAVHDLLGLDISHFTTEKLEFYG---------NINYMKGGIIAADQVTTVSPTYRDEILT 224          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_MAGSA (Glycogen synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glgA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 54/166 (32.53%), Postives = 76/166 (45.78%), Query Frame = 1
Query:   19 VDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKS--SFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            VD P    +  G  Q        G D+ DN LRF +L   +  A  +   NS   +        V  ANDW T L P YL A + P    +    VF IHNIAYQG+F  +    L  P +  +   F++ D          ++++K+G+  SD + TVSP YA+E
Sbjct:   87 VDCPALFERAGGPYQDP-----QGRDWPDNALRFALL---SWTAAHLCTENSPVKW-----RPQVLHANDWQTGLAPAYLHA-WSPA---QRPATVFTIHNIAYQGQFPRDLVPRLGFPPEMYAMDGFEYYD---------TLSFLKSGLFYSDRITTVSPRYAKE 226          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_SALAR6.888e-1134.06Glycogen synthase OS=Salmonella arizonae (strain A... [more]
GLGA_CLOK56.888e-1131.58Glycogen synthase OS=Clostridium kluyveri (strain ... [more]
GLGA_CLOK16.888e-1131.58Glycogen synthase OS=Clostridium kluyveri (strain ... [more]
GLGA_BACLD6.888e-1129.82Glycogen synthase OS=Bacillus licheniformis (strai... [more]
GLGA_MAGSA8.996e-1132.53Glycogen synthase OS=Magnetospirillum magneticum (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
back to top