FC868546
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSI (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.981e-22 Identity = 66/173 (38.15%), Postives = 89/173 (51.45%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525 D F+D P F + Q IYG Q+ R I+ C+AA+E P + Y G ++VF+ANDWHT+L+P YLKA Y+ GM + + V IHNIAYQGR ++F + LP + F D PV G N AG+ +D V+TVSP Y E + E Sbjct: 397 DFVFIDAPLFRHR-----QDDIYGGNR----QEIMKRMILFCKAAVEVPWHVPCGGVPYGDG----NLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYD----PVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTE 552
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 3.296e-21 Identity = 65/177 (36.72%), Postives = 90/177 (50.85%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525 D FVDH + G IYG + DNQ RF +L AA EAP +L L Y GE +F+ANDWH +L+P L A Y+P G+YK A+ + IHNIA+QG + L LP Q+ + ++I + G +N +K I +D +LTVS Y+ E + E Sbjct: 216 DWVFVDHSSYCRP--GTPYGDIYGA-----FGDNQFRFTLLSHAACEAPLVLPLGGFTY-----GEKCLFLANDWHAALVPLLLAAKYRPYGVYKDARSIVAIHNIAHQGVEPAVTYNNLGLPPQWYGAVEWIFPTWARAHALDTGETVNVLKGAIAVADRILTVSQGYSWEITTPE 380
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.342e-21 Identity = 66/182 (36.26%), Postives = 92/182 (50.55%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552 D F+D P ++ +S IYG D R ++ C+AA+E P + Y G ++VF+ANDWHT+L+P YLKA Y+ G+ + V IHNIA+QGR EDF ++L + F D PV G N AG+ +D ++TVS YA E + E G L NI Sbjct: 339 DIVFIDSP-----IFRNLESNIYGGNR----LDILRRMVLFCKAAVEVPWHVPCGGICYGDG----NLVFIANDWHTALLPVYLKAYYRDHGLMNYTRSVLVIHNIAHQGRGPVEDFNTVDLSGNYLDLFKMYD----PVGGEHFNIFAAGLKTADRIVTVSHGYAWELKTSE-GGWGLHNI 502
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 9.589e-21 Identity = 64/178 (35.96%), Postives = 90/178 (50.56%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE--TVSG 522 D FVDH + YG G + DNQ RF +LC AA EAP +L L Y GE +F+ NDWH L+P L A Y+P G+YK A+ + IHN+A+QG + L LP+++ + ++ + G +N +K I+ SD ++TVS YA E TV G Sbjct: 227 DWVFVDHKSY------HRPGNPYGDSKGA-FGDNQFRFTLLCHAACEAPLVLPLGGFTY-----GEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEG 392
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3) HSP 1 Score: 98.5969 bits (244), Expect = 2.136e-20 Identity = 53/132 (40.15%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 115 RFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510 R ++ C+AA+E P + Y G ++VF+ANDWHT+L+P YLKA Y+ G+ + V IHNIA+QGR EDF ++LP + F D PV G N AG+ +D V+TVS Y+ E Sbjct: 381 RMVLFCKAAIEVPWHVPCGGVCYGDG----NLVFIANDWHTALLPVYLKAYYRDNGIMNYTRSVLVIHNIAHQGRGPLEDFSYVDLPPHYMDPFKLYD----PVGGEHFNIFAAGLKTADRVVTVSHGYSWE 504
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 8.118e-20 Identity = 62/168 (36.90%), Postives = 88/168 (52.38%), Query Frame = 1 Query: 7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510 D F++ P F + + IYG GE + D R I+ C+AA+E P + Y G ++VF+ANDWHT+L+P YLKA Y+ G+ + + V IHNIA+QGR +DF ++LP + F D PV G N AG+ +D +TVS Y E Sbjct: 281 DFVFLEAPPFRHR-----HNDIYG---GERF-DVLKRMILFCKAAVEVPWFAPCGGSIYGDG----NLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFATMDLPEHYIDHFRLYD----PVGGEHSNVFAAGLKMADRAVTVSHGYLWE 431
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.808e-19 Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 1 Query: 16 FVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552 F++H F + +++YG GE Y DN RF+ +A LE +I+NLN + V +DWHT+LIP YLK +Y+ ++ K V +HN+ YQG F E L Q D ++ Y +N++K G+ +D++ TVSP YA+E ++ D G LD + Sbjct: 100 FIEHNNFFDR------NELYGTNHGE-YLDNAERFVFFSRAVLEICKIMNLNFD-----------VIHCHDWHTALIPLYLKTLYRECSCFEKTKTVLTVHNLGYQGIFPREKLELTGF-GQEMFHIDGLEFYG------MVNFLKGGLFNADIITTVSPTYAKEILT-PDYGAGLDGV 252
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_OPITP (Glycogen synthase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=glgA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.296e-17 Identity = 57/153 (37.25%), Postives = 84/153 (54.90%), Query Frame = 1 Query: 94 DYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552 DY+DN RFI C+ +E R+ ++ + DVV A+DW +L+P L+ + +G + K +F IHNIA+QG F F NLP + +S D ++ Y +IN+MKAGIL +D V TVSP YA+E + + G LD + Sbjct: 107 DYEDNSDRFIFFCKGVVETLRLADMQA----------DVVH-AHDWQAALLPLLLREAERRQGGMLAMKTIFTIHNIAFQGIFPRAVFARTNLPDEL-NSVDGLEYY------EQINFMKAGILFADRVTTVSPRYAEE-IQTPEFGCGLDGV 240
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPT (Glycogen synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.169e-16 Identity = 57/155 (36.77%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 88 GEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552 G+D+ DN LRF L Q + L P+ + V A+DW T L+P YLK +P K VF IHN+A+QGRF +E G L LP + D I+ Y I ++KAG+ +D + TVSP YA E + G + G+ LD + Sbjct: 104 GKDWPDNGLRFAALAQVGAALGQGLL---------PHYKPDVLHAHDWQTGLLPAYLKYSGRP-----GPKTVFTIHNLAFQGRFPYELLGRLGLPER-AFGLDGIEYYG------GIGYLKAGLQLADRITTVSPSYAAE-IQGSEAGMGLDGL 236
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.445e-16 Identity = 57/155 (36.77%), Postives = 79/155 (50.97%), Query Frame = 1 Query: 88 GEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552 G+D+ DN LRF L Q + L P+ + V A+DW T L+P YLK +P K VF IHN+A+QGRF +E G L LP + D I+ Y I ++KAG+ +D + TVSP YA E + G + G+ LD + Sbjct: 104 GKDWPDNGLRFAALAQVGAALGQGLL---------PHYKPDVLHAHDWQTGLLPAYLKYSGRP-----GPKTVFTIHNLAFQGRFPYELLGRLGLPER-AFGLDGIEYYG------GIGYLKAGLQLADRITTVSPTYAAE-IQGSEAGMGLDGL 236 The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 135
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bpback to top |