FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:586..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSI (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.981e-22
Identity = 66/173 (38.15%), Postives = 89/173 (51.45%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            D  F+D P F  +     Q  IYG       Q+   R I+ C+AA+E P  +      Y  G    ++VF+ANDWHT+L+P YLKA Y+  GM +  + V  IHNIAYQGR   ++F  + LP  +   F   D    PV G   N   AG+  +D V+TVSP Y  E  + E
Sbjct:  397 DFVFIDAPLFRHR-----QDDIYGGNR----QEIMKRMILFCKAAVEVPWHVPCGGVPYGDG----NLVFLANDWHTALLPVYLKAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYD----PVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTE 552          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.296e-21
Identity = 65/177 (36.72%), Postives = 90/177 (50.85%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            D  FVDH  +     G     IYG      + DNQ RF +L  AA EAP +L L    Y     GE  +F+ANDWH +L+P  L A Y+P G+YK A+ +  IHNIA+QG      +  L LP Q+  + ++I       +    G  +N +K  I  +D +LTVS  Y+ E  + E
Sbjct:  216 DWVFVDHSSYCRP--GTPYGDIYGA-----FGDNQFRFTLLSHAACEAPLVLPLGGFTY-----GEKCLFLANDWHAALVPLLLAAKYRPYGVYKDARSIVAIHNIAHQGVEPAVTYNNLGLPPQWYGAVEWIFPTWARAHALDTGETVNVLKGAIAVADRILTVSQGYSWEITTPE 380          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.342e-21
Identity = 66/182 (36.26%), Postives = 92/182 (50.55%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            D  F+D P     ++   +S IYG        D   R ++ C+AA+E P  +      Y  G    ++VF+ANDWHT+L+P YLKA Y+  G+    + V  IHNIA+QGR   EDF  ++L   +   F   D    PV G   N   AG+  +D ++TVS  YA E  + E  G  L NI
Sbjct:  339 DIVFIDSP-----IFRNLESNIYGGNR----LDILRRMVLFCKAAVEVPWHVPCGGICYGDG----NLVFIANDWHTALLPVYLKAYYRDHGLMNYTRSVLVIHNIAHQGRGPVEDFNTVDLSGNYLDLFKMYD----PVGGEHFNIFAAGLKTADRIVTVSHGYAWELKTSE-GGWGLHNI 502          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.589e-21
Identity = 64/178 (35.96%), Postives = 90/178 (50.56%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE--TVSG 522
            D  FVDH  +            YG   G  + DNQ RF +LC AA EAP +L L    Y     GE  +F+ NDWH  L+P  L A Y+P G+YK A+ +  IHN+A+QG      +  L LP+++  +  ++       +    G  +N +K  I+ SD ++TVS  YA E  TV G
Sbjct:  227 DWVFVDHKSY------HRPGNPYGDSKGA-FGDNQFRFTLLCHAACEAPLVLPLGGFTY-----GEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEG 392          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.136e-20
Identity = 53/132 (40.15%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  115 RFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            R ++ C+AA+E P  +      Y  G    ++VF+ANDWHT+L+P YLKA Y+  G+    + V  IHNIA+QGR   EDF  ++LP  +   F   D    PV G   N   AG+  +D V+TVS  Y+ E
Sbjct:  381 RMVLFCKAAIEVPWHVPCGGVCYGDG----NLVFIANDWHTALLPVYLKAYYRDNGIMNYTRSVLVIHNIAHQGRGPLEDFSYVDLPPHYMDPFKLYD----PVGGEHFNIFAAGLKTADRVVTVSHGYSWE 504          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 8.118e-20
Identity = 62/168 (36.90%), Postives = 88/168 (52.38%), Query Frame = 1
Query:    7 DREFVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            D  F++ P F  +      + IYG   GE + D   R I+ C+AA+E P       + Y  G    ++VF+ANDWHT+L+P YLKA Y+  G+ +  + V  IHNIA+QGR   +DF  ++LP  +   F   D    PV G   N   AG+  +D  +TVS  Y  E
Sbjct:  281 DFVFLEAPPFRHR-----HNDIYG---GERF-DVLKRMILFCKAAVEVPWFAPCGGSIYGDG----NLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSVLVIHNIAHQGRGPVDDFATMDLPEHYIDHFRLYD----PVGGEHSNVFAAGLKMADRAVTVSHGYLWE 431          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.808e-19
Identity = 59/179 (32.96%), Postives = 91/179 (50.84%), Query Frame = 1
Query:   16 FVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            F++H  F  +      +++YG   GE Y DN  RF+   +A LE  +I+NLN +           V   +DWHT+LIP YLK +Y+    ++  K V  +HN+ YQG F  E   L     Q     D ++ Y        +N++K G+  +D++ TVSP YA+E ++  D G  LD +
Sbjct:  100 FIEHNNFFDR------NELYGTNHGE-YLDNAERFVFFSRAVLEICKIMNLNFD-----------VIHCHDWHTALIPLYLKTLYRECSCFEKTKTVLTVHNLGYQGIFPREKLELTGF-GQEMFHIDGLEFYG------MVNFLKGGLFNADIITTVSPTYAKEILT-PDYGAGLDGV 252          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_OPITP (Glycogen synthase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.296e-17
Identity = 57/153 (37.25%), Postives = 84/153 (54.90%), Query Frame = 1
Query:   94 DYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DY+DN  RFI  C+  +E  R+ ++ +          DVV  A+DW  +L+P  L+   + +G   + K +F IHNIA+QG F    F   NLP +  +S D ++ Y       +IN+MKAGIL +D V TVSP YA+E +   + G  LD +
Sbjct:  107 DYEDNSDRFIFFCKGVVETLRLADMQA----------DVVH-AHDWQAALLPLLLREAERRQGGMLAMKTIFTIHNIAFQGIFPRAVFARTNLPDEL-NSVDGLEYY------EQINFMKAGILFADRVTTVSPRYAEE-IQTPEFGCGLDGV 240          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPT (Glycogen synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.169e-16
Identity = 57/155 (36.77%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   88 GEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            G+D+ DN LRF  L Q      + L          P+ +  V  A+DW T L+P YLK   +P       K VF IHN+A+QGRF +E  G L LP +     D I+ Y        I ++KAG+  +D + TVSP YA E + G + G+ LD +
Sbjct:  104 GKDWPDNGLRFAALAQVGAALGQGLL---------PHYKPDVLHAHDWQTGLLPAYLKYSGRP-----GPKTVFTIHNLAFQGRFPYELLGRLGLPER-AFGLDGIEYYG------GIGYLKAGLQLADRITTVSPSYAAE-IQGSEAGMGLDGL 236          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPA (Glycogen synthase OS=Rhodopseudomonas palustris GN=glgA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.445e-16
Identity = 57/155 (36.77%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   88 GEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            G+D+ DN LRF  L Q      + L          P+ +  V  A+DW T L+P YLK   +P       K VF IHN+A+QGRF +E  G L LP +     D I+ Y        I ++KAG+  +D + TVSP YA E + G + G+ LD +
Sbjct:  104 GKDWPDNGLRFAALAQVGAALGQGLL---------PHYKPDVLHAHDWQTGLLPAYLKYSGRP-----GPKTVFTIHNLAFQGRFPYELLGRLGLPER-AFGLDGIEYYG------GIGYLKAGLQLADRITTVSPTYAAE-IQGSEAGMGLDGL 236          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SSY23_ORYSI2.981e-2238.15Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
SSY1_SOLTU3.296e-2136.72Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSG2_PEA7.342e-2136.26Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY1_ARATH9.589e-2135.96Soluble starch synthase, chloroplastic/amyloplasti... [more]
SSY2_SOLTU2.136e-2040.15Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY22_ORYSJ8.118e-2036.90Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
GLGA_THEYD1.808e-1932.96Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
GLGA_OPITP1.296e-1737.25Glycogen synthase OS=Opitutus terrae (strain DSM 1... [more]
GLGA_RHOPT4.169e-1636.77Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_RHOPA5.445e-1636.77Glycogen synthase OS=Rhodopseudomonas palustris GN... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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