FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:586..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP2 (Glycogen synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=glgA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = 1
Query:   88 GEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            G+D+ DN LRF  L QA     + L L         Y  D++  A+DW T L+P YL    +P     + K VF IHN+AYQG+F +E    + LP +   S D ++ Y        I ++KAG+  +D + TVSP YA E + G D G+ L+ +
Sbjct:  104 GKDWPDNALRFAALAQAGAAIGQGLLLG--------YAPDILH-AHDWQTGLVPAYLAYSGRP-----APKCVFTIHNLAYQGQFPYELLTRIGLPER-AFSLDGVEYYG------GIGYLKAGLQLADRITTVSPTYALE-IQGPDAGMGLEGL 236          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ACIBL (Glycogen synthase OS=Acidobacteria bacterium (strain Ellin345) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.702e-15
Identity = 56/170 (32.94%), Postives = 81/170 (47.65%), Query Frame = 1
Query:   16 FVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            FVD+P +  +        +YG   G DY DN  RF +  +A +E  +IL            G   +F  +DW ++LIP  L+ +Y     +  AK+VF IHN+ YQG F  E   LL LP      +D          G K+N++K  ++ +D V TVS  YA E  + E
Sbjct:   85 FVDYPAYFDR------DALYGTPIG-DYHDNAERFALFSRAVIEGSKIL------------GVPDIFHCHDWQSALIPVLLRTLYAEDPAFDHAKIVFTIHNMGYQGLFPGEILPLLMLP------WDLFTLTKMEFYG-KVNFLKGALVYADFVTTVSRRYALEIQTAE 228          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ELUMP (Glycogen synthase OS=Elusimicrobium minutum (strain Pei191) GN=glgA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.529e-15
Identity = 51/156 (32.69%), Postives = 80/156 (51.28%), Query Frame = 1
Query:   94 DYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR---KINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DY DN  RFI   +A LE+ + +           Y  D++  A+DW   L+P YLK +YK    +   + +F IHN+AYQG++ +  F         K+ F  +D    P R      I+++K+GI+ +D V TVSP+YA+E    E  G  ++ +
Sbjct:  105 DYFDNDERFIFFNRAVLESCKFIG----------YRPDIIH-AHDWQAGLLPAYLKTVYKTDAFFTRTRSLFTIHNMAYQGQYPYSTF--------IKTGFHTVD--YVPERFEYYGGISYLKSGIVYADYVNTVSPNYAKEITLDEKMGFGMEGL 239          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_RHOBA (Glycogen synthase OS=Rhodopirellula baltica GN=glgA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.610e-15
Identity = 60/181 (33.15%), Postives = 88/181 (48.62%), Query Frame = 1
Query:   16 FVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQF--KSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            F+D P++  +        +YG   G DY DN  RFI  C+AA+ A   L           Y  D+V   NDW ++L+P  L+A        +    +  IHN+AYQG F F+ F    L        SF++   YN      ++N++K G++ SD+V TVSP YA E +   + G  LD+I
Sbjct:   97 FIDQPQYFRR------PSLYGDANG-DYHDNAERFIFYCRAAIIAMTRLG----------YPVDLVH-CNDWQSALVPALLRAASDNVAKTQPIATMLSIHNMAYQGNFGFDAFPWTGLSWDHFRPESFEY---YN------QLNFLKTGVVTSDVVSTVSPTYALE-IQTPEYGCGLDSI 249          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_THEM4 (Glycogen synthase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.863e-15
Identity = 54/144 (37.50%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  121 IVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            I    A LE  ++L+L            DV+ V NDW TSLIP YLK +YK    Y     +  IHN+ YQG F  +      LP  +  + D I+ Y       KIN++K GIL SD++ TVSP YA E +  ++ G +LD +
Sbjct:  111 IYFSAAVLETLKVLDLQM----------DVLHV-NDWQTSLIPVYLKTLYKEDEFYAKTVTLLTIHNLGYQGIFDSKYMEFSGLP-NYLYNIDGIEFYG------KINFLKGGILYSDIINTVSPTYANE-IQTKEYGEKLDGV 235          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ANADF (Glycogen synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.863e-15
Identity = 63/187 (33.69%), Postives = 87/187 (46.52%), Query Frame = 1
Query:    1 SRDRE---FVDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQF--KSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELD 546
            SRDR    FV+H  F     G     +YG     DY DN  RF  L +AAL  P  L L  +           +   NDW T L+P  L+  +        A+ VF IHN+AYQG F+      L LP       + +F D         ++N++KAG++ +D + TVSP YA+E ++    GV LD
Sbjct:   73 SRDRAPVYFVEHEHFFGSRRG-----LYGE--AHDYGDNAERFAYLARAALALPGALGLRPH-----------IVHLNDWQTGLVPFLLRREHARDAALAGARTVFTIHNLAYQGVFSKHVVPALGLPWDVFRYEAMEFHD---------QLNFLKAGLVFADALTTVSPTYARE-IATPQGGVGLD 231          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_THELT (Glycogen synthase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glgA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  166 LNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            + + KY S  +  D+V  A+DW T L+P YLK +Y+    +     VF IHN+ YQG F         LPA +  + D ++ Y       +IN++K GIL SD+V TVSP YAQE +  E  G +LD +
Sbjct:  122 IEAMKYLSETF--DIVH-AHDWQTGLVPVYLKTLYRTDPFFNRTATVFTIHNLGYQGVFNPGYMKFAGLPA-YLFNIDGLEFYG------QINFLKGGILFSDIVTTVSPTYAQE-IQTEQFGEKLDGV 239          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_THEAB (Glycogen synthase OS=Thermosipho africanus (strain TCF52B) GN=glgA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.341e-14
Identity = 48/119 (40.34%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  199 GEDV-VFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            GE V V   NDW T L+P YLK +YK    +    V+  IHN+ YQG F         LP  +  + D I+ Y       KIN++K GIL SD++ TVSP YAQE +  ++ G +LD +
Sbjct:  129 GEKVDVLHINDWQTGLVPVYLKTLYKDDEFFSKTVVLLTIHNLGYQGIFDSSYMNFSGLP-DYLYNIDGIEFYG------KINFLKGGILFSDVINTVSPTYAQE-IQTKEYGEKLDGV 239          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_LEPCP (Glycogen synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glgA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.341e-14
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            Y       Y DN LRF +L   A +    L+         PY    V  A+DWH +L P YL+A+   +G  + A  V+ +HN+AYQG F    FG L LPA + +    ++ Y       +I++MK G+  +D + TVSP YA+E + G + G  LD +
Sbjct:  102 YNDARQHPYDDNHLRFGLLGWVAAKLADGLD---------PYWAPRVVHAHDWHAALAPAYLRALEWARGR-RLAGSVYTVHNLAYQGFFPAHHFGDLGLPAAY-NQVHGLEFYG------QISFMKGGLYFADRITTVSPTYARE-IQGAEQGCGLDGL 243          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_FRAP2 (Glycogen synthase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glgA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.752e-14
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            Y   + + Y DN LRF +L   A      L+          +  +VV  ++DWH  L+P Y+KA     G  K+ K VF +HN+AYQG F    F  L+LP  F  S + ++ Y       ++++MKAG+  +D + TVSP YA+E  S E
Sbjct:   99 YADSSNQAYADNYLRFALLGWVAARISEGLDAK--------WKPEVVH-SHDWHAGLVPAYIKASELASGK-KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIF-LSMNGLEFYG------QVSFMKAGLYFADKITTVSPTYAKEIQSYE 232          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_RHOP22.069e-1536.13Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_ACIBL2.702e-1532.94Glycogen synthase OS=Acidobacteria bacterium (stra... [more]
GLGA_ELUMP3.529e-1532.69Glycogen synthase OS=Elusimicrobium minutum (strai... [more]
GLGA_RHOBA4.610e-1533.15Glycogen synthase OS=Rhodopirellula baltica GN=glg... [more]
GLGA_THEM47.863e-1537.50Glycogen synthase OS=Thermosipho melanesiensis (st... [more]
GLGA_ANADF7.863e-1533.69Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_THELT1.027e-1438.76Glycogen synthase OS=Thermotoga lettingae (strain ... [more]
GLGA_THEAB1.341e-1440.34Glycogen synthase OS=Thermosipho africanus (strain... [more]
GLGA_LEPCP1.341e-1434.38Glycogen synthase OS=Leptothrix cholodnii (strain ... [more]
GLGA_FRAP21.752e-1435.10Glycogen synthase OS=Francisella philomiragia subs... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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