FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:586..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_RHOFD (Glycogen synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glgA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 57/155 (36.77%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   88 GEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            G+D+ DN +RF  L  A     + L+         P+    V   +DWH+ L P Y++A    K    +   VF IHN+AYQG FA  +   L LP   KS FD IDG+       K+++MKA +  +D + TVSP YA+E +S E  G  LD +
Sbjct:  111 GKDWSDNAIRFAALGWAGATLGQGLD---------PHWRPDVIHCHDWHSGLTPTYVRAFAAAK--QATPATVFTIHNLAYQGLFAAAEVTRLGLP---KSWFD-IDGFE---FFGKVSFMKAALRYADRITTVSPTYARE-ISSEAQGCGLDGL 246          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_THESQ (Glycogen synthase OS=Thermotoga sp. (strain RQ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 1
Query:   34 FLAKVWGKTQSKIY-GPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            F+A  +  +   +Y GP  GE       + I  C A L+  + L+L            D+V V NDW T+LIP YLK +Y+    +     V  IHN+ YQG F  +      LP  +  + D ++ Y      R++N++K GI+ SD++ TVSP YA+E +  E+ G +L+ +
Sbjct:   92 FVANDYYFSAEDVYAGPDLGE-------QAIFFCAATLDLVKHLDLKP----------DIVHV-NDWQTALIPVYLKTVYRDDPYFSRTATVLTIHNLGYQGVFDPKYLSFAGLP-DYVFTIDGLEFY------RQLNFLKGGIVFSDVINTVSPTYAEE-IQTEEYGEKLEGV 239          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_THEP1 (Glycogen synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 1
Query:   34 FLAKVWGKTQSKIY-GPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            F+A  +  +   +Y GP  GE       + I  C A L+  + L+L            D+V V NDW T+LIP YLK +Y+    +     V  IHN+ YQG F  +      LP  +  + D ++ Y      R++N++K GI+ SD++ TVSP YA+E +  E+ G +L+ +
Sbjct:   92 FVANDYYFSAEDVYAGPDLGE-------QAIFFCAATLDLVKHLDLKP----------DIVHV-NDWQTALIPVYLKTVYRDDPYFSRTATVLTIHNLGYQGVFDPKYLSFAGLP-DYVFTIDGLEFY------RQLNFLKGGIVFSDVINTVSPTYAEE-IQTEEYGEKLEGV 239          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_AQUAE (Glycogen synthase OS=Aquifex aeolicus GN=glgA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 56/161 (34.78%), Postives = 83/161 (51.55%), Query Frame = 1
Query:   70 IYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            IYGP  G  Y+DN +RF    +A  E             +G    DVV  ANDW T+LIP +LK ++K        K VF IHN+AYQG F  E    + +P  +    + ++ +        +N+MK GI+ SD++ TVSP YA+E +  ++ G  L+ +
Sbjct:   92 IYGP-PGWGYEDNDIRFGGFSRAVSEL----------ISTGQLEADVVH-ANDWQTALIPLFLKEVFKTP-----VKTVFTIHNLAYQGLFPKETVERVGIPP-YLFHMEAVEFWGL------VNFMKGGIVFSDLITTVSPTYAKE-IQTQEYGYGLEGV 227          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_THEMA (Glycogen synthase OS=Thermotoga maritima GN=glgA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 1
Query:   34 FLAKVWGKTQSKIY-GPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            F+A  +  +   +Y GP  GE       + I  C A L+  + L+L            D+V V NDW T+LIP YLK +Y+    +     V  IHN+ YQG F  +      LP  +  + D ++ Y       ++N++K GI+ SD++ TVSP YA+E +  E+ G +LD +
Sbjct:   92 FVANDYYFSAEDVYAGPDLGE-------QAIFFCAATLDLVKHLDLKP----------DIVHV-NDWQTALIPVYLKTVYRDDPYFSRTATVLTIHNLGYQGVFDPKYLSFAGLP-DYVYTIDGLEFYG------QLNFLKGGIVFSDVINTVSPTYAEE-IQTEEYGEKLDGV 239          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_FRATW (Glycogen synthase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y   + + Y DN LRF +L   A      L+          +  ++V  ++DWH  L+P Y+KA     G  K+ K VF +HN+AYQG F    F  L+LP  F  S + ++ Y       ++++MKAG+  +D + TVSP YA+E
Sbjct:   99 YADSSNQAYADNYLRFALLGWVAARISEGLDAK--------WKPEIVH-SHDWHAGLVPAYIKASELASGK-KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIF-LSMNGLEFYG------QVSFMKAGLYFADKITTVSPTYAKE 227          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_FRATT (Glycogen synthase OS=Francisella tularensis subsp. tularensis GN=glgA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y   + + Y DN LRF +L   A      L+          +  ++V  ++DWH  L+P Y+KA     G  K+ K VF +HN+AYQG F    F  L+LP  F  S + ++ Y       ++++MKAG+  +D + TVSP YA+E
Sbjct:   99 YADSSNQAYADNYLRFALLGWVAARISEGLDAK--------WKPEIVH-SHDWHAGLVPAYIKASELASGK-KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIF-LSMNGLEFYG------QVSFMKAGLYFADKITTVSPTYAKE 227          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_FRATM (Glycogen synthase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y   + + Y DN LRF +L   A      L+          +  ++V  ++DWH  L+P Y+KA     G  K+ K VF +HN+AYQG F    F  L+LP  F  S + ++ Y       ++++MKAG+  +D + TVSP YA+E
Sbjct:   99 YADSSNQAYADNYLRFALLGWVAARISEGLDAK--------WKPEIVH-SHDWHAGLVPAYIKASELASGK-KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIF-LSMNGLEFYG------QVSFMKAGLYFADKITTVSPTYAKE 227          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_FRAT1 (Glycogen synthase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y   + + Y DN LRF +L   A      L+          +  ++V  ++DWH  L+P Y+KA     G  K+ K VF +HN+AYQG F    F  L+LP  F  S + ++ Y       ++++MKAG+  +D + TVSP YA+E
Sbjct:   99 YADSSNQAYADNYLRFALLGWVAARISEGLDAK--------WKPEIVH-SHDWHAGLVPAYIKASELASGK-KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIF-LSMNGLEFYG------QVSFMKAGLYFADKITTVSPTYAKE 227          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_DESHD (Glycogen synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 56/165 (33.94%), Postives = 80/165 (48.48%), Query Frame = 1
Query:   25 HPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFE-DFGLLNLPAQFKSS--FDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            H  FL   +   +S+ YG        D   ++    +A LE+ R L          P  +  +   +DWHT+L+P +LKA Y    +Y + K +F IHN+ YQG F  E    +L L  +  SS   +F  G         +N+MKAGI+ SD V TVSP YA+E
Sbjct:   83 HYYFLDNEYYFRRSRCYGDG------DEGEQYAYFSRAVLESVRYL----------PEFKPDIIHCHDWHTALVPLFLKAFYAQDTLYYNIKTLFTIHNLKYQGIFPREVREDVLGLSGELSSSAQLEFYGG---------VNFMKAGIMHSDQVTTVSPTYARE 222          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_RHOFD2.988e-1436.77Glycogen synthase OS=Rhodoferax ferrireducens (str... [more]
GLGA_THESQ3.902e-1432.18Glycogen synthase OS=Thermotoga sp. (strain RQ2) G... [more]
GLGA_THEP13.902e-1432.18Glycogen synthase OS=Thermotoga petrophila (strain... [more]
GLGA_AQUAE3.902e-1434.78Glycogen synthase OS=Aquifex aeolicus GN=glgA PE=3... [more]
GLGA_THEMA5.096e-1432.18Glycogen synthase OS=Thermotoga maritima GN=glgA P... [more]
GLGA_FRATW5.096e-1434.25Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRATT5.096e-1434.25Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRATM5.096e-1434.25Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRAT15.096e-1434.25Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_DESHD5.096e-1433.94Glycogen synthase OS=Desulfitobacterium hafniense ... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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