FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:586..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 55/161 (34.16%), Postives = 85/161 (52.80%), Query Frame = 1
Query:   70 IYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            +YG   G  + DN  RF  L   AL+A + L           +  D++  ANDW T L+P  L+  ++  G    AK VF IHN+AYQG+F  +  G L LP    ++ D ++ ++       +N++KAG++ SD + TVSP YA+E +   + G  LD +
Sbjct:   99 LYGDAGGA-FADNHRRFAYLSVGALQAAQRLR----------FIPDIIH-ANDWQTGLVPVALRRGFQT-GPLAHAKSVFTIHNLAYQGQFPKDVMGDLALPWDLFTAHDGLEFHD------TVNFLKAGLVFSDALTTVSPTYARE-IQTPEQGYGLDGL 239          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_FRATN (Glycogen synthase OS=Francisella tularensis subsp. novicida (strain U112) GN=glgA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y   + + Y DN LRF +L   A      L+          +  ++V  ++DWH  L+P Y+KA     G  K+ K VF +HN+AYQG F    F  L+LP  F  S + ++ Y       ++++MKAG+  +D + TVSP YA+E
Sbjct:   99 YADSSNQAYADNYLRFALLGWIAARISEGLDAK--------WKPEIVH-SHDWHAGLVPAYIKASELASGK-KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIF-LSMNGLEFYG------QVSFMKAGLYFADKITTVSPTYAKE 227          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_FRATO (Glycogen synthase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.693e-14
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y   + + Y DN LRF +L   A      L+          +  ++V  ++DWH  L+P Y+KA     G  K+ K VF +HN+AYQG F    F  L+LP  F  S + ++ Y       ++++MKAG+  +D + TVSP YA+E
Sbjct:   99 YADSSNQAYADNYLRFALLGWVAARISEGLDAK--------WKPEIVH-SHDWHAGLVPAYIKASELASGK-KAVKTVFTVHNLAYQGLFPMSVFTELDLPGIF-LSMNGLEFYG------QVSFMKAGLYFADKITTVSPTYAKE 227          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_FRATH (Glycogen synthase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.693e-14
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y   + + Y DN LRF +L   A      L+          +  ++V  ++DWH  L+P Y+KA     G  K+ K VF +HN+AYQG F    F  L+LP  F  S + ++ Y       ++++MKAG+  +D + TVSP YA+E
Sbjct:   99 YADSSNQAYADNYLRFALLGWVAARISEGLDAK--------WKPEIVH-SHDWHAGLVPAYIKASELASGK-KAVKTVFTVHNLAYQGLFPMSVFTELDLPGIF-LSMNGLEFYG------QVSFMKAGLYFADKITTVSPTYAKE 227          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_FRATF (Glycogen synthase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.693e-14
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 1
Query:   73 YGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y   + + Y DN LRF +L   A      L+          +  ++V  ++DWH  L+P Y+KA     G  K+ K VF +HN+AYQG F    F  L+LP  F  S + ++ Y       ++++MKAG+  +D + TVSP YA+E
Sbjct:   99 YADSSNQAYADNYLRFALLGWVAARISEGLDAK--------WKPEIVH-SHDWHAGLVPAYIKASELASGK-KAVKTVFTVHNLAYQGLFPMSVFTELDLPGIF-LSMNGLEFYG------QVSFMKAGLYFADKITTVSPTYAKE 227          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_PETMO (Glycogen synthase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 55/166 (33.13%), Postives = 81/166 (48.80%), Query Frame = 1
Query:   55 KTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            KT S +Y  +   D ++  L+    C +AL+  +    ++N           V   NDWHTSLIP YLK  Y    + K    +  IHNI YQG F  E      LP  +  + + ++ Y       K+N +K GIL S+++ TVSP YA+E +  E+ G  L+ I
Sbjct:   92 KTDS-LYDSKNIYDEENIFLKTSYFCDSALKTIKECEPDTN-----------VININDWHTSLIPVYLKTHYLQDNILKKIATILTIHNIGYQGLFNPEVLNQAGLP-NYLFNMNALEYYG------KVNVLKGGILFSNIINTVSPTYAKE-IQSEEYGYGLEGI 237          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_DESVM (Glycogen synthase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=glgA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 56/155 (36.13%), Postives = 72/155 (46.45%), Query Frame = 1
Query:   94 DYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQ--FKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DY DN  RFI  C+AA+   R L                V  ANDW + L+P YL    +    +   + V  IHN+A+QGRFA   F    LP Q    S  +F   +         N +KAGI  +DMV TVSP YA+E + G   G  L+ I
Sbjct:  107 DYFDNCERFIFFCRAAMALLRRLGT-----------PPAVLHANDWQSGLVPAYLHFWRQTDPFWADTRSVMTIHNLAFQGRFASRLFTGCGLPPQAWTMSGVEFWGDF---------NLLKAGIAYADMVTTVSPSYARE-ILGPAYGCGLEGI 240          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPS (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.529e-13
Identity = 53/154 (34.42%), Postives = 79/154 (51.30%), Query Frame = 1
Query:   91 EDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            +D+ DN LRF  L QA     + L           Y  D++  A+DW T L+P YL+   +P     + K VF IHN+AYQG+F  E    + LP +   S D ++ Y        I ++KAG+  +D + TVSP YA E + G + G+ L+ +
Sbjct:  105 KDWPDNALRFAALAQAGAWIGQGLLPG--------YAPDILH-AHDWQTGLLPAYLRYSGRP-----APKCVFTIHNLAYQGQFPSELLARIGLPER-AFSLDGVEYYG------GIGYLKAGLQLADRITTVSPSYALE-IQGSEAGMGLEGL 236          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_DESVH (Glycogen synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=glgA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.529e-13
Identity = 55/153 (35.95%), Postives = 73/153 (47.71%), Query Frame = 1
Query:   94 DYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DY DN  RF+  C+A L   R L                V  A+DW T+L+P +L  + +    ++  + V  IHN+A+QGRFA   F    LP Q  S    +DG          N +KAGI  +D V TVSP YA+E + G   G  LD I
Sbjct:  107 DYFDNCERFVFFCRALLALMRRLGQ-----------PPAVLHAHDWQTALVPAFLYFLRQTDPFWQDTRSVLTIHNLAFQGRFASRLFETSGLPPQAWS----VDGAE---FWGDFNLLKAGIAYADKVTTVSPSYARE-ILGPAYGSGLDGI 240          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_DESVV (Glycogen synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glgA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 55/153 (35.95%), Postives = 73/153 (47.71%), Query Frame = 1
Query:   94 DYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            DY DN  RF+  C+A L   R L                V  A+DW T+L+P +L  + +    ++  + V  IHN+A+QGRFA   F    LP Q  S    +DG          N +KAGI  +D V TVSP YA+E + G   G  LD I
Sbjct:  107 DYFDNCERFVFFCRALLALMRRLGQ-----------PPAVLHAHDWQTALVPAFLYFLRQGDPFWQDTRSVLTIHNLAFQGRFASRLFETSGLPPQAWS----VDGAE---FWGDFNLLKAGIAYADKVTTVSPSYARE-ILGPAYGSGLDGI 240          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_MYXXD6.656e-1434.16Glycogen synthase OS=Myxococcus xanthus (strain DK... [more]
GLGA_FRATN6.656e-1434.25Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRATO8.693e-1434.25Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRATH8.693e-1434.25Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRATF8.693e-1434.25Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_PETMO1.135e-1333.13Glycogen synthase OS=Petrotoga mobilis (strain DSM... [more]
GLGA_DESVM1.135e-1336.13Glycogen synthase OS=Desulfovibrio vulgaris (strai... [more]
GLGA_RHOPS2.529e-1334.42Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_DESVH2.529e-1335.95Glycogen synthase OS=Desulfovibrio vulgaris (strai... [more]
GLGA_DESVV3.303e-1335.95Glycogen synthase OS=Desulfovibrio vulgaris subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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