FC868546

Overview
NameFC868546
Unique NameFC868546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:586..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ERWT9 (Glycogen synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.813e-11
Identity = 50/143 (34.97%), Postives = 66/143 (46.15%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            Y DN LRF +L   + E    L+         P+    V  A+DWH  L   YL A  +P      AK VF +HN+AYQG F       + LP        F D Y     G +I+++KAG+  +D V  VSP YA+E    E
Sbjct:  103 YSDNYLRFALLGWVSCELACGLD---------PWWRPEVVHAHDWHAGLSCAYLAARGRP------AKSVFTVHNLAYQGLFNARHMEQIQLP------HSFFDVYGMEFHG-QISYLKAGLFYADHVTAVSPTYAREITQPE 223          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_STRA3 (Glycogen synthase OS=Streptococcus agalactiae serotype III GN=glgA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 57/154 (37.01%), Postives = 77/154 (50.00%), Query Frame = 1
Query:   94 DYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            D+ D + RF     AALE    +N          +  DV+ V +D+HT++IP  LK  Y     Y + + VF IHNI +QG+F  E  G L  + A+      + DG  +      +NWMKA IL SD V TVSP YA E +   + G  LD I
Sbjct:  101 DWDDGE-RFAYFQLAALELMEKIN----------FIPDVLHV-HDYHTAMIPFLLKEKYHWIQAYNNIRTVFTIHNIEFQGQFGPEMLGDLFGVGAE-----RYEDGTLR--WNNCLNWMKAAILYSDRVTTVSPSYANE-IKTPEFGKGLDQI 234          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA1_RHIME (Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 57/178 (32.02%), Postives = 81/178 (45.51%), Query Frame = 1
Query:   19 VDHPRFLAKVWGKTQSKIYGPRTGEDYQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            +D P   A+  G      Y   TG DY DN  RF  L  AA E        +       +  D+V V +DW T+L P Y++      G       V  IHNIA+QG+F    F  L LP    S+  F++ Y        + ++K G+  +  + TVSP YAQE ++ E  G+ LD +
Sbjct:   83 LDQPALYARDGGP-----YLDSTGRDYPDNFRRFAALSLAAAEI-------AGNGIIPNWKPDIVHV-HDWQTALTPVYMRF-----GPAPDLPTVMTIHNIAFQGQFGASVFPELALPPDAFST-QFVEYYG------DVGFLKGGLQTASAITTVSPSYAQEILTPE-FGMGLDGL 234          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_EDWI9 (Glycogen synthase OS=Edwardsiella ictaluri (strain 93-146) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11
Identity = 54/143 (37.76%), Postives = 66/143 (46.15%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVSGE 525
            Y DN LRF +L   A E    L  N +     P+    V  A+DWH  L   YL A   P      A+ VF +HN+AYQG F       L LP  F         Y     G+ I++MKAG+  +D V TVSP YAQE    E
Sbjct:  103 YGDNHLRFALLGWIAAE----LACNCD-----PFWRPQVVHAHDWHAGLACAYLAARGNP------ARSVFTVHNLAYQGLFNARHLDELALPHHF------FQIYGLEFHGQ-ISFMKAGLYYADHVTTVSPTYAQEITHPE 223          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ALKMQ (Glycogen synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.092e-11
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  223 NDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            +DW T++I   LK  Y+  G YK+ K VF IHN+ YQG F  E  G L     F  S    +       G  +N+MK G+  SD + TVSP YAQE
Sbjct:  132 HDWQTAMISYLLKTQYQHHGFYKNIKTVFTIHNLKYQGVFPQEVLGDL-----FNGSQQHFNEGGVEYHG-NVNYMKGGLNFSDYITTVSPTYAQE 221          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_YERP3 (Glycogen synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 49/138 (35.51%), Postives = 68/138 (49.28%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN  RF +L   A E    L+          Y    V  A+DWH  L   YL A  +P      A+ VF +HN+AYQG F+      L LPA+F   +  ++ Y       +I+++KAG+  +D V TVSP YA+E
Sbjct:  103 YSDNYQRFALLGWMACELACGLD---------GYWRPEVVHAHDWHAGLTCAYLAARGRP------ARSVFTVHNLAYQGLFSAHHLSELQLPAEFFQIYG-LEFYG------QISYLKAGLFFADHVTTVSPTYAKE 218          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_LACS1 (Glycogen synthase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  205 DVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVR-GRKINWMKAGILESDMVLTVSPHYAQETVSGEDXGVELDNI 552
            D++ V ND+HT+ IP  LK  Y     Y+S K V  IHN+ +QG +  E  G L NL A +     + DG    VR    +N+MK GIL +D V TVSP YA E +  E  G  LD I
Sbjct:  128 DILHV-NDYHTAFIPFLLKEKYGWINAYQSIKTVLTIHNLQFQGEYGREVLGELFNLDASY-----YDDG---TVRFDTAVNFMKTGILYADKVNTVSPTYASE-IQTEAFGQGLDEI 235          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_ANOFW (Glycogen synthase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 43/139 (30.94%), Postives = 68/139 (48.92%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y D + RF   C+A L+   +++   N           V   +DWHT +IP  L+  Y     Y   K VF IHN+ +QG F  E  G LLNL  ++  S + ++ Y        +++MK  ++ + ++ TVSP Y +E
Sbjct:  102 YDDGE-RFSYFCRAVLDCLPVIDFQPN-----------VIHCHDWHTGMIPFLLREEYMRNSFYAQMKTVFTIHNLQFQGIFPREILGDLLNLSDRY-FSIEHLEFYG------HVSFMKGALVSAHLITTVSPTYKEE 221          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_VIBFM (Glycogen synthase OS=Vibrio fischeri (strain MJ11) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 45/142 (31.69%), Postives = 69/142 (48.59%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEA-PRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQETVS 519
            Y DN  RF     A L+  P++LN             D++ V NDWHT LIP  LK  Y     Y   + V  IHN  ++G F +++   L   ++FKS F         +    ++ +KAG+  +D +  VSP+YA+E ++
Sbjct:  108 YADNGERFAFFSAATLDLLPKLLNKKP----------DIIHV-NDWHTGLIPYLLKKRYAENEFYHQTRSVLSIHNAVFKGIFHYDEIACL---SEFKSHF----VPEASISHTHVSMLKAGVQCADKINAVSPNYAKELLT 231          
BLAST of FC868546 vs. ExPASy Swiss-Prot
Match: GLGA_SHISS (Glycogen synthase OS=Shigella sonnei (strain Ss046) GN=glgA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 47/138 (34.06%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   97 YQDNQLRFIVLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKAMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQE 510
            Y DN LRF +L     E    L+         P+    V  A+DWH  L P YL A  +P      AK VF +HN+AYQG F       + LP      + F + +     G +I+++KAG+  +D +  VSP YA+E
Sbjct:  103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGLYYADHITAVSPTYARE 218          
The following BLAST results are available for this feature:
BLAST of FC868546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
GLGA_ERWT91.813e-1134.97Glycogen synthase OS=Erwinia tasmaniensis (strain ... [more]
GLGA_STRA32.367e-1137.01Glycogen synthase OS=Streptococcus agalactiae sero... [more]
GLGA1_RHIME2.367e-1132.02Glycogen synthase 1 OS=Rhizobium meliloti GN=glgA1... [more]
GLGA_EDWI93.092e-1137.76Glycogen synthase OS=Edwardsiella ictaluri (strain... [more]
GLGA_ALKMQ3.092e-1141.67Glycogen synthase OS=Alkaliphilus metalliredigens ... [more]
GLGA_YERP34.038e-1135.51Glycogen synthase OS=Yersinia pseudotuberculosis s... [more]
GLGA_LACS14.038e-1142.37Glycogen synthase OS=Lactobacillus salivarius subs... [more]
GLGA_ANOFW4.038e-1130.94Glycogen synthase OS=Anoxybacillus flavithermus (s... [more]
GLGA_VIBFM5.274e-1131.69Glycogen synthase OS=Vibrio fischeri (strain MJ11)... [more]
GLGA_SHISS5.274e-1134.06Glycogen synthase OS=Shigella sonnei (strain Ss046... [more]

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Properties
Property NameValue
Genbank descriptionC31001G05EF AbioticL1 Citrus clementina cDNA clone C31001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868546 ID=FC868546; Name=FC868546; organism=Citrus clementina; type=EST; length=552bp
TCCCGGGATCGGGAGTTTGTGGATCATCCTCGGTTTCTTGCGAAGGTGTG
GGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGGAGAGGACTACC
AGGACAACCAACTTCGCTTCATTGTGTTGTGCCAGGCAGCTCTTGAAGCA
CCGAGAATTCTGAATCTTAACAGCAACAAATATTTCTCTGGACCATATGG
AGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTCCCTTATCCCTT
GTTACCTGAAAGCTATGTATAAGCCCAAAGGGATGTACAAAAGTGCCAAA
GTTGTTTTTTGTATCCACAATATTGCTTACCAAGGAAGATTTGCATTTGA
GGATTTTGGACTTCTCAACCTTCCAGCTCAATTCAAAAGCTCTTTTGACT
TTATTGATGGATACAATAAACCTGTGAGAGGAAGAAAAATCAACTGGATG
AAAGCTGGAATATTAGAATCAGACATGGTCTTAACTGTGAGCCCACACTA
TGCCCAAGAAACTGTTTCTGGTGAAGACNAAGGAGTAGAATTGGATAACA
TC
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