FC868559

Overview
NameFC868559
Unique NameFC868559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:22..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 66/208 (31.73%), Postives = 101/208 (48.56%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+ L  ++ R+                       E KK+  A L+ + + A+ VR + HT   K  G+ +KK  ++EI++ G ++AE++ YA     K + +   F
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKL-----------------TLAKKEEKKTADA-LDAVVEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVF 189          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 66/208 (31.73%), Postives = 101/208 (48.56%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+ L  ++ R+                       E KK+  A L+ + + A+ VR + HT   K  G+ +KK  ++EI++ G ++AE++ YA     K + +   F
Sbjct:    4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVF 189          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 66/202 (32.67%), Postives = 91/202 (45.05%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQI 661
            K   PR GSL F PRKRA     K K++P+   +    L  F GYK GMTH++   +   S    KE    VTIIE           Y K   G  +L  +WA+ L  ++ RR                   Y++   KK     L       + +  LA+TQ   M G+ +K   LMEI+V GG IA++ +YA+G   K+I
Sbjct:    3 KINRPRRGSLAFSPRKRAQSPIPKYKSWPEHSGAPA--LLGFAGYKVGMTHVLMVDDHKDSPTEGKEIMVPVTIIEIPTMKVAALRVYTKDTYGKHALTEIWAEPLDSQLSRR-------------VTSPKNYDSTAAKKKYSDAL--AAGLVAEIYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEI 187          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 65/209 (31.10%), Postives = 97/209 (46.41%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            +   PR GS+ F PRKRAAR   +VK++P+ D+P     L A  GYKAGMTH++    +  S     E    VTI+E           Y KT RGL++L  V A    +++RR+                   Y+ +   + I++ +E    Y + VRV+ HT  R +  + +KK  + E  + G T  EK +YA     K +     F
Sbjct:    3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKL------------TPPADDYDQEAAIEKIRSNME----YVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIF 190          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 63/208 (30.29%), Postives = 99/208 (47.60%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            K+  PR GSL F PRKRA     +++A+P+ D     R+  F GYKAGMTH+V   ++  S  + +E    VT+IET          Y KT  G++    VW+ +L + + RR                       + +  ++     ++  AS VRV+ +TQ   + G+ +K   +ME ++ GG + E +DYA     K+I V   F
Sbjct:    2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVF 186          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 58/190 (30.53%), Postives = 95/190 (50.00%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            PR GS+GF PR RAA    +  ++P DD  +P  L  F GYKAGM+H+V   ++P S    +E    VT++ET          Y  TP G R L  VW   + E++ R                   + ++ + +  I+  L+  +   + VRV+ HT    +  + +K+  +ME +V GG+++++VD+A
Sbjct:    7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSL--------------SVPEEQSGDIEGDIRTALD--EGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFA 178          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 65/205 (31.71%), Postives = 100/205 (48.78%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            PR GSL F PRKRA R   +++++P++D     RL AF  YKAGM+H     + P S    +E    +TI+E           Y +  R  L +L  VWA +L +E+ R+                  +    E +K+++  LE +K     VRVL HT   K+  L +KK  ++EI++ G  I E+++YA     KQ+ +   F
Sbjct:    8 PRRGSLAFSPRKRAKRPVPRIRSWPEED---TVRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVF 190          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 59/190 (31.05%), Postives = 86/190 (45.26%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ET          Y  TP G + L  VWA    E + R                       DEG  + +       +  + +RV+ HT      G+ +K   +ME +V GGT+A+++++A
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFA 176          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 59/190 (31.05%), Postives = 86/190 (45.26%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ET          Y  TP G + L  VWA    E + R                       DEG  + +       +  + +RV+ HT      G+ +K   +ME +V GGT+A+++++A
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFA 176          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 68/214 (31.78%), Postives = 98/214 (45.79%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQL-EKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            M HRK   PR GS G  PRKRA       K +P  +  +P +L  F+GYKAGMTH+    +KP S  + KE    VTI+E+          Y    +G L  L   WA    EE   ++ K                 + D  K   +  L +K     + +R+L  TQ   +  L +K+  ++EIQ+ GG+I ++++Y      KQIPV   F
Sbjct:    1 MGHRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVF 200          
The following BLAST results are available for this feature:
BLAST of FC868559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_METM52.088e-1931.7350S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM62.727e-1931.7350S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METB63.562e-1932.6750S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_METTH1.768e-1831.1050S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_ARCFU1.768e-1830.2950S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_NATPD8.773e-1830.5350S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_METJA8.773e-1831.7150S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_HALSA3.334e-1731.0550S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS33.334e-1731.0550S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_SULAC4.354e-1731.7850S ribosomal protein L3P OS=Sulfolobus acidocalda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001H07EF AbioticL1 Citrus clementina cDNA clone C31001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868559 ID=FC868559; Name=FC868559; organism=Citrus clementina; type=EST; length=679bp
GAGAGCACACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTC
ACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGG
AAGCGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGA
CCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGA
TGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAG
AAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGT
GGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTCGCTCTTTGA
ACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGAAGGTTCTAC
AAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATACTCAAAGCA
GTATGAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGA
TCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGG
AAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGT
CAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTT
GAAAGCAAATTCCTGTTGATGCTGNTTTC
back to top