FC868559

Overview
NameFC868559
Unique NameFC868559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:22..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 64/209 (30.62%), Postives = 100/209 (47.85%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP--RGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFF*KQI-PVD 670
            K   PR GS+ + PRKRA+    +++ +P  D  KP  L  F+GYKAGM H+    ++  S    KE  +AVT++ET          Y   P    L S+   W  ++  EVR+   +               +++TD+    +Q  L+ +    S ++V+A TQ  K  G+ +K   ++EI V G  TI E+  YA G   K++ P D
Sbjct:    4 KIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPT-LLGFVGYKAGMVHVTVVDDRKTSPFFGKELVKAVTVVETPPLYVVGLRAYAINPLKAELVSVGEAWV-NIPNEVRKYIARR--------IPTLPEKFDTDKALADLQGLLDSV----SYIKVIAMTQPYK-AGVGKKTPEVLEIPVGGVPTIDEQFKYASGLLGKEVKPTD 197          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 65/224 (29.02%), Postives = 101/224 (45.09%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWA----QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    Q L    R R + ++               + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +   F
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIRSFSSFL--------------KNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVF 209          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 57/190 (30.00%), Postives = 86/190 (45.26%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            PR GSL + PRKRA     K  ++P  D  +P  L +F GYK GMTH++   +   S    K+    VTIIE           Y     G R+L  VW + LS  + RR                  +Y  + G K++   +       + +  L +TQ   + G+ +K   LME+ + GGT+ +KV++A
Sbjct:    7 PRRGSLAYSPRKRAKSQVPKYHSWPARD-GEPI-LQSFAGYKVGMTHVIMVDDHKNSPTEGKDIMVPVTIIEIPPMKVAAIRAYTADTYGKRALTEVWTEQLSTLLGRRI-------------TLPKKYSEEAGFKALSEAV--AAGTVTELHALMYTQPDTLTGVPKKVPELMEVCIGGGTLEQKVEFA 179          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_SULIY (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 63/222 (28.38%), Postives = 100/222 (45.05%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +   F
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVF 209          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 63/222 (28.38%), Postives = 100/222 (45.05%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +   F
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVF 209          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 63/222 (28.38%), Postives = 100/222 (45.05%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +   F
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVF 209          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 63/222 (28.38%), Postives = 100/222 (45.05%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +   F
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVF 209          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 63/222 (28.38%), Postives = 100/222 (45.05%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +   F
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVF 209          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 62/208 (29.81%), Postives = 95/208 (45.67%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFF*KQI 661
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P     RS+  VWA  L   +RR                      T   K  +  Q++K++++  V   VR L  TQ   + G+ +K   L+EI + G  ++ E++ +A     K +
Sbjct:    8 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL--------------------TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTV 193          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 61/208 (29.33%), Postives = 93/208 (44.71%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFF*KQI 661
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE    VT+++           Y   P     RS+  VWA  L   +RR                      T   K  +  Q++K++++  V   VR L  TQ   + G+ +K   L+EI + G  ++ E++ +A     K +
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRRVL--------------------TLPEKADVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTV 189          
The following BLAST results are available for this feature:
BLAST of FC868559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_CALMQ6.952e-1530.6250S ribosomal protein L3P OS=Caldivirga maquilinge... [more]
RL3_SULIA9.079e-1529.0250S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_METPE9.079e-1530.0050S ribosomal protein L3P OS=Methanosphaerula palu... [more]
RL3_SULIY1.186e-1428.3850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIN1.186e-1428.3850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIM1.186e-1428.3850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIL1.186e-1428.3850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIK1.186e-1428.3850S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_PYRIL1.549e-1429.8150S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_THENV2.642e-1429.3350S ribosomal protein L3P OS=Thermoproteus neutrop... [more]

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Properties
Property NameValue
Genbank descriptionC31001H07EF AbioticL1 Citrus clementina cDNA clone C31001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868559 ID=FC868559; Name=FC868559; organism=Citrus clementina; type=EST; length=679bp
GAGAGCACACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTC
ACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGG
AAGCGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGA
CCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGA
TGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAG
AAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGT
GGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTCGCTCTTTGA
ACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGAAGGTTCTAC
AAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATACTCAAAGCA
GTATGAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGA
TCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGG
AAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGT
CAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTT
GAAAGCAAATTCCTGTTGATGCTGNTTTC
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