FC868559

Overview
NameFC868559
Unique NameFC868559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:22..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 63/208 (30.29%), Postives = 93/208 (44.71%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFF*KQI 661
            K   PR GS+G  PRKRAA    +V+ +P  +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P    LRS   VWA  L + + R                      T   K  +  Q++++++Y  V   VR L  TQ   + G+ +K   L+EI + G   I E++ +A     K +
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPDVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLFVWGFRLYTLDPTNGYLRSAAEVWAGELPKHLSRVL--------------------TLPEKVDVDKQMKQVEEYRDVAVEVRALVATQ-PHLSGIGKKTPELLEIPIGGVPNIDERIKFAISLLGKTV 189          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 51/191 (26.70%), Postives = 86/191 (45.03%), Query Frame = 2
Query:   65 HPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            H R GS+ + PR RA R +G ++++P+ +     ++ AF GYK GMTHI     +  S    +     VT++E           Y +   GL  ++  WA+++ ++V RR  K                   +  KK I+       K    VR++ HT  + + G+  K   + EI++ G TI  ++ YA
Sbjct:    6 HSRRGSMAYYPRVRAKRIQGDIRSWPEIEGQ--TKVQAFAGYKVGMTHIQMVDYRKNSVTAGQVIMAPVTVVEVPPLTVMSIRYYARGDNGLEVISEEWAENIDKDVLRRINK------------------INRHKKGIEV------KDVDDVRLMVHTNPQLVSGVPSKTPEIFEIRIGGSTIENRIKYA 170          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 61/208 (29.33%), Postives = 96/208 (46.15%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFF*KQI 661
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P     R++  VWA  L + + R                      T   K  +  QL+K++++  V   VR L  TQ   + G+ +K   L+EI + G  ++ E++++A     K +
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASELPKFLHRVL--------------------TLPEKLDVDKQLKKVEEFRDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERINFAISLLGKTV 189          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 57/201 (28.36%), Postives = 91/201 (45.27%), Query Frame = 2
Query:   41 RMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            R   R    PR GSL F PRKRA+R   +++++P ++     R+  F GYKAGMTH +   + P S    +E    VTI++           Y  TP G R +   WA+   E    R +                     +G+     ++E++     V  +RV+  TQ +K  G+ +KK  +ME ++ G  + E+ +YA
Sbjct:    3 RGGRRNPGRPRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVFT-----------------VPKDGEAGDLDKIEELVDEGIVEEIRVIVATQPKK-AGVPKKKPDVMEYRIGGKDVRERFEYA 182          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 60/206 (29.13%), Postives = 90/206 (43.69%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFP--KDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPVDAXF 679
            PR GSL + PRKRA     K  A+P  + +P+    L  F GYK GMTH++   +   S    K+    VT+IE           Y     G   L  VWA    +E+ RR                   Y+ +E +K I+  LE   K   VV  L +T+   + G+ +K   LME +++GG++ E+ +Y      K   + + F
Sbjct:    7 PRMGSLAYSPRKRAKSPVPKYHAWPAYQGEPA----LQGFAGYKVGMTHVIMVDDHAHSPNEGKDIMVPVTVIEVPDMRVAAIRVYRHDTYGNHVLTEVWADSFDKELSRRL-------------NLSKNYKREEAEKKIREALE-ADKIVDVV-ALTYTRPSVLTGVPKKVPDLMETRIDGGSMTERFEYGLSMLGKDFDIRSLF 193          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 61/190 (32.11%), Postives = 88/190 (46.32%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 637
            PR GSL + PRKRA     K +++P+ +      L  F GYKAGMTH++   +   S    KE    VT+IE           YVK   G   L  VWA++L E +  R  K                 +T+   K+ +     I     V+ VL +T+  ++ G+ +K   LMEI+V GG+  E+ DYA
Sbjct:    6 PRAGSLAYYPRKRAKGIVPKYQSWPEYNGQP--MLQGFAGYKAGMTHVIMIDDHKKSPTEGKEVMVPVTVIEIPAMTVAAIRVYVKDTYGKHPLTEVWAENL-EALSGRITK----------------AKTNNAAKATEKINAAIGDVVEVM-VLMYTKPTELTGVPKKVPDLMEIRVAGGSAQERFDYA 175          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 51/189 (26.98%), Postives = 83/189 (43.92%), Query Frame = 2
Query:   68 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDY 634
            PR GS+GF PRKRA     +++++  +D +   +   F GYKAGMT ++   ++  S     E    VT++ET          Y  TP G + L  VW +     + R                    +E D       A+   I      VR++ HT    M+ + +K   +ME +V GGT+ ++V++
Sbjct:    7 PRKGSMGFSPRKRAESEVPRIRSWASNDGAPGVQ--GFAGYKAGMTQVLMVNDEANSPREGMEEAVPVTVVETPPMRAVALRAYEDTPYGSKPLTEVWGREFDTSLERTL-----------DLPNEDTFEDDAAALRDDAETGDIDD----VRLITHTLPAGMRNIPKKTPDVMETRVGGGTLTDRVEF 178          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 61/205 (29.76%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP-RGLR-SLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFF*KQI 661
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P  G + ++   W      ++RR                   +++T++  K+    LE+ +  A  VRVL  TQ R + G+ +K   ++EI V G  +I E++++A     K +
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVAAVRLYTLDPTNGYKVAVGEAWVSEPPADLRR-------------VLTLPEKFDTEKQLKA----LEEYRDVAVDVRVLVATQPR-LSGIGKKTPEVLEIPVGGVPSIDERINFAISLLGKTV 189          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 52/204 (25.49%), Postives = 93/204 (45.59%), Query Frame = 2
Query:   56 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFF*KQIPV 667
            K   PR GSL + PRKRA     +  ++P+   +   +   F GYK GMTH++   +   S    K+    VT++E           Y +   G  +L   W   L EE+ RR                   ++T    ++++A + + K   S +  LA+T+  ++ G+ +K   LME+++ GG++ +++ YA     K+I +
Sbjct:    3 KINRPRRGSLAYSPRKRAKSPVPRYGSWPEYTGAPAVQ--GFAGYKVGMTHVIMVDDHKSSPTEGKDVMVPVTVVEVPPMRVAGVRAYGEDTYGKHALTEAWTTDLDEELSRRI-------------NVPKNHDTAAALEAVKAAVGEGK--VSELYALAYTRPMELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITI 189          
BLAST of FC868559 vs. ExPASy Swiss-Prot
Match: RL3_METS5 (50S ribosomal protein L3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 57/200 (28.50%), Postives = 86/200 (43.00%), Query Frame = 2
Query:   44 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRS-LNTVWAQ--HLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDY 634
            M HRK   PR GS G  PRKR+       +++P+ +   P  L  F+GYK GMTHI    E   S +  KE    VT++ET          Y    RG  S +  VW       + + RR                  + + +   K I++ LE +    S  R+L  TQ   +  L +K   ++E+Q+ GG    +++Y
Sbjct:    1 MGHRKLSSPRRGSAGLRPRKRSEELLPSPRSYPEVNLPNPVTL-GFVGYKVGMTHIFMIDEDRSSSMFGKEIYVPVTVLETPPIYVLALRAYGLNNRGEHSVMGEVWGDLGDFGKFITRRI-----------RGLKIDKEKKEHQLKDIESNLESV----SYFRLLVSTQPHLIPALGKKTPDIVEVQIGGGNTKNQLEY 184          
The following BLAST results are available for this feature:
BLAST of FC868559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_PYRAR2.642e-1430.2950S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]
RL3_PICTO2.642e-1426.7050S ribosomal protein L3P OS=Picrophilus torridus ... [more]
RL3_PYRAE3.450e-1429.3350S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_METKA3.450e-1428.3650S ribosomal protein L3P OS=Methanopyrus kandleri... [more]
RL3_METHJ3.450e-1429.1350S ribosomal protein L3P OS=Methanospirillum hung... [more]
RL3_METLZ5.885e-1432.1150S ribosomal protein L3P OS=Methanocorpusculum la... [more]
RL3_HALWD1.004e-1326.9850S ribosomal protein L3P OS=Haloquadratum walsbyi... [more]
RL3_PYRCJ1.712e-1329.7650S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]
RL3_METMJ1.712e-1325.4950S ribosomal protein L3P OS=Methanoculleus marisn... [more]
RL3_METS52.921e-1328.5050S ribosomal protein L3P OS=Metallosphaera sedula... [more]

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Properties
Property NameValue
Genbank descriptionC31001H07EF AbioticL1 Citrus clementina cDNA clone C31001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868559 ID=FC868559; Name=FC868559; organism=Citrus clementina; type=EST; length=679bp
GAGAGCACACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTC
ACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGG
AAGCGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGA
CCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGA
TGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAG
AAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGT
GGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTCGCTCTTTGA
ACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGAAGGTTCTAC
AAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATACTCAAAGCA
GTATGAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGA
TCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGG
AAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGT
CAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTT
GAAAGCAAATTCCTGTTGATGCTGNTTTC
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