FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_RHISN (L-threonine 3-dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=tdh PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 71/194 (36.60%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ + +P +GP DVL+R+K   +CG+DVH     + A   +  PMV+GHE  G I +VGS V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G  A  V  P      +PD+V  E  A+ +P    VH     ++  E +VL+ G+GPIG++  L A+  GA ++VI D++  RL +
Sbjct:   17 LWMERVPVPEVGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIAEVGSAVTKHHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFAEFVCLPEYNVVTIPDDVPDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIMGALVAKRSGARKVVITDINPVRLDL 207          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_PSYIN (L-threonine 3-dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=tdh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 63/188 (33.51%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  133 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            ++ P  G  D+L+++    +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +V PA   FK+P  +S +  ++ +P    VH+    ++  E +VLI G+GPIG++    A+  GA  +VI D+++YRL +
Sbjct:   20 VDKPEPGHNDLLIKIHKTAICGTDIHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFSVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRT-GAFAEYLVIPAFNAFKIPAGISDDLASIFDPFGNAVHSALSFDVVGE-DVLITGAGPIGIMAAAVAKHAGARYVVITDINEYRLDL 205          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_MESSB (L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (strain BNC1) GN=tdh PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 70/195 (35.90%), Postives = 106/195 (54.36%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVH--GCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ + LP +GP DVL++++   +CG+DVH       A   V  P+V GHE  G +  VGS V     G RV+ E  I C  C  C+ GR +LC  + G+G   VH  G  A  +  P      +PD+V  E  A+ +PL   VH     ++  E +VL+ G+GPIG++  L A+  GA ++VI D++  RL++
Sbjct:   17 LWMERVPLPEIGPNDVLIKVRKAAICGTDVHIWNWDEWARKTVPVPLVTGHEFVGEVVDVGSAVTEYRIGQRVSGEGHIVCGHCRNCRAGRGHLCRNTLGVG---VHRPGAFAEYISLPQHNVVAIPDDVPDEIAAIFDPLGNAVHTALSFDLVGE-DVLVTGAGPIGIMGALVAQCVGARKVVITDINPGRLAL 207          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_AGRRK (L-threonine 3-dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=tdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.503e-25
Identity = 66/194 (34.02%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ + +P +GP DVL+R++   +CG+DVH     + A   +  PMV+GHE  G I ++GS V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G     V  P      +PD++  E  A+ +P    VH     ++  E +VL+ G+GPIG++  + A+  GA ++VI D++  RL++
Sbjct:   17 LWMEHVPVPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFCGEIAEIGSAVTKYHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFGEFVCIPESNVVPIPDDIPDEVAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIMGAMVAKRSGARKVVITDINPNRLAL 207          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_SYMTH (L-threonine 3-dehydrogenase OS=Symbiobacterium thermophilum GN=tdh PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 66/191 (34.55%), Postives = 103/191 (53.93%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            +Q + +P++GP DVLV+++A  +CG+D H       +   VK P+ IGHE AG +  VG EV     GD V+ E  I C +C  C  G Y+LC  +K LG     G  A  V  P    +    ++  E  ++ EPL   VH     ++    +VLI G GPIG++++  A+  GA  ++ +D+++YRL +
Sbjct:   19 LQEVPIPTIGPRDVLVKVRAASICGTDYHIYTWDPWSAGRVKPPLTIGHELAGEVVAVGREVTACKVGDYVSAETHIVCNRCPRCHMGEYHLCENTKILG-VDTDGAFAEYVAVPEQNIWVNDKDIPFELQSIQEPLGNAVHTALNGDL-TARSVLITGCGPIGIMSVPVAKMAGAEIVMAMDINEYRLQL 207          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_RHIME (L-threonine 3-dehydrogenase OS=Rhizobium meliloti GN=tdh PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 67/194 (34.54%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ + +P +GP DVL+R++   +CG+DVH     + A+  +  PMV+GHE  G + +VG  V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G  A  V  P      +PD+V  E  A+ +P    VH     ++  E +VL+ G+GPIG++  + A+  GA ++VI D++  RL +
Sbjct:   17 LWMERVPVPEIGPNDVLIRVRKSAICGTDVHIWNWDQWAEKTIPVPMVVGHEFMGEVVEVGPAVSKHHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFAEFVCLPEYNVVSIPDDVPDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIMGAMVAKRCGARKVVITDINPVRLDL 207          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_SINMW (L-threonine 3-dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=tdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 69/194 (35.57%), Postives = 108/194 (55.67%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ + +P +GP DVL+R++   +CG+DVH     + A   +  PMV+GHE  G I +VG  V     G+RV+ E  I C +C  C+ GR +LC  + G+G + P  G  A  V  P      +PD+V  E  A+ +P    VH     ++  E +VL+ G+GPIG++  L A+  GA ++VI D++  RL +
Sbjct:   17 LWMERVPVPEVGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIVEVGPAVTKHHVGERVSGEGHIVCGKCRNCRAGRGHLCRNTLGVGVNRP--GSFAEFVCLPEYNVVSIPDDVPDEIAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGIMGALVAKRCGARKVVITDINPVRLDL 207          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_RHILO (L-threonine 3-dehydrogenase OS=Rhizobium loti GN=tdh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 65/192 (33.85%), Postives = 104/192 (54.17%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            ++ + +P +GP DVL++++   +CG+DVH     + A   V  PMV GHE  G +   G+ V     G RV+ E  I C  C  C+ GR +LC  + G+G + P  G     +  P      +PD+V  E  A+ +PL   VH     ++  E +VL+ G+GPIG++  L A+  GA ++VI D++  RL++
Sbjct:   19 MEEVPVPEIGPNDVLIKIRKTAICGTDVHIYNWDQWAQKTVPVPMVTGHEFVGTVADFGAAVTEYKVGQRVSGEGHIVCGHCRNCRAGRGHLCRNTLGVGVNRP--GAFGEYLAIPQHNVVPIPDDVPDEIAAIFDPLGNAVHTALSFDLVGE-DVLVTGAGPIGIMGALVAQCVGARKVVITDINPVRLAL 207          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_SOLUE (L-threonine 3-dehydrogenase OS=Solibacter usitatus (strain Ellin6076) GN=tdh PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 69/194 (35.57%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            L ++ +  P++G  DVL+R+   G+CG+DVH  K    A   +  PM IGHE  G IE VGS V    PGD V+ E  + C +C  C  GR +LC ++ G+G + P  G  A  +  P    ++  + + L+  A+ +P    VH      +  E +VLI G+GPIG++    AR   A   VI D++ YRL +
Sbjct:   13 LWLEEIPEPAIGINDVLIRVLRTGICGTDVHIYKWDEWARETIHVPMAIGHEFVGRIEAVGSNVADFFPGDIVSGEGHVVCGRCRNCFAGRRHLCAKTMGVGVNRP--GAFAEYIALPMTNIWRHHEGIDLDVAAIFDPFGNAVHTALSFPVLGE-DVLITGAGPIGIMAAAVARHAAARYTVITDLNPYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_BACSU (L-threonine 3-dehydrogenase OS=Bacillus subtilis GN=tdh PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24
Identity = 61/184 (33.15%), Postives = 102/184 (55.43%), Query Frame = 1
Query:  139 LPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRL 690
            +P +  ++VL+++KA  +CG+DVH     + A   +K P V GHE +G++E VG  V ++  G+ V+ E  I C +C  C  G+ ++C  +  +G     GC A  V  PAD  ++ P ++     ++ EPL   VH    +     T  +I G GPIGL+ +  A+A GA +++ +D ++YRL
Sbjct:   25 IPEIDKHEVLIKVKAASICGTDVHIYNWDQWARQRIKTPYVFGHEFSGIVEGVGENVSSVKVGEYVSAETHIVCGECVPCLTGKSHVCTNTAIIGVDTA-GCFAEYVKVPADNIWRNPADMDPSIASIQEPLGNAVHTVLESQPAGGTTAVI-GCGPIGLMAVAVAKAAGASQVIAIDKNEYRL 206          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
TDH_RHISN1.204e-2536.60L-threonine 3-dehydrogenase OS=Rhizobium sp. (stra... [more]
TDH_PSYIN2.054e-2533.51L-threonine 3-dehydrogenase OS=Psychromonas ingrah... [more]
TDH_MESSB2.682e-2535.90L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (... [more]
TDH_AGRRK3.503e-2534.02L-threonine 3-dehydrogenase OS=Agrobacterium radio... [more]
TDH_SYMTH5.975e-2534.55L-threonine 3-dehydrogenase OS=Symbiobacterium the... [more]
TDH_RHIME7.803e-2534.54L-threonine 3-dehydrogenase OS=Rhizobium meliloti ... [more]
TDH_SINMW1.019e-2435.57L-threonine 3-dehydrogenase OS=Sinorhizobium medic... [more]
TDH_RHILO1.019e-2433.85L-threonine 3-dehydrogenase OS=Rhizobium loti GN=t... [more]
TDH_SOLUE1.331e-2435.57L-threonine 3-dehydrogenase OS=Solibacter usitatus... [more]
TDH_BACSU1.738e-2433.15L-threonine 3-dehydrogenase OS=Bacillus subtilis G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
back to top