FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 56/212 (26.42%), Postives = 92/212 (43.40%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSP----------------PVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPL----------SVGV-HACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            I+ +E+     ++V ++M A G+C SD H +        V   P++ GHE AG++E +G  V T+ PGD+V       C +C  CK    N C ++  L  P                P+H  L           + + D +S+ +     PL          S G   A + A +   +   + G G +GL  ++G +A GA RI+ VD++
Sbjct:   24 IEEVEVAPPKAHEVRIKMVATGICRSDDHVVS----GTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKN-DLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQ----YTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 226          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: DOIAD_STRKN (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces kanamyceticus GN=kanE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 56/180 (31.11%), Postives = 82/180 (45.56%), Query Frame = 1
Query:  136 ELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGS---EVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVI 666
            ++P+  P + LV +    +CGSD   L   R        P+V GHE +G + ++       ++LV G  V  +   +C  C  C  G   LC   + LG      C A  +  P D    LPD +SL      EPL+V ++A   A + P   V +MG+G IGL+ M  AR  G    V+
Sbjct:   18 DVPTPRPGEALVHIAYNSICGSD---LSLYRGVWHGFGYPVVPGHEWSGTVVEINGANGHDQSLV-GKNVVGDLTCACGNCAACGRGTPVLCENLQELGFTKDGAC-AEYMTIPVDNLRPLPDALSLRSACQVEPLAVALNAVSIAGVAPGDRVAVMGAGGIGLMLMQVARHLGGEVTVV 192          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 60/212 (28.30%), Postives = 95/212 (44.81%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPPVH----GCLANQVVH------------PADLCF-KLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            L I+ +E+     ++V +++ A GVC +D     TL  AD     P+V+GHE AG++E VG  V     GD V       C +C +CK G+ NLC +   ++G G  P       C   Q+ H             AD+   K+ +   LE+  +   L  G+      A   A +   +   + G G +GL   LG +  GA +I  +D++
Sbjct:   23 LVIEDIEVAPPKAHEVRIKITATGVCHTDAF---TLSGADPEGLFPVVLGHEGAGIVESVGEGVTNFKAGDHVIALYIPQCNECKFCKSGKTNLCQKIRLTQGAGVMPEGTSRLSCKGQQLFHFMGTSTFAEYTVVADISLTKINEKAPLEKVCL---LGCGISTGYGAALNTAKVEAGSTCAVWGLGAVGLAVGLGCKKAGAGKIYGIDIN 228          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 56/214 (26.17%), Postives = 93/214 (43.46%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQ-------------------------VVHPADLCFKLPDNVSLEEGAM--CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            L I+ +E+     ++V +++ A  VC +D++     + A F    P+V+GHECAG++E VG  V    PGD+V       C +C  C     NLC + +    P +   L                            VV  A+L  ++ D  +LE   +  C   S    A   A + P +   + G G +GL  ++G +  GA RI+ +D++
Sbjct:   22 LCIEEIEVSPPKAHEVRIKVIATCVCPTDINATNPKKKALF----PVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKKCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTSKERSIYHFMGVSSFSQYTVVSEANLA-RVDDEANLERVCLIGCGFTSGYGAAINTAKVTPGSACAVFGLGCVGLSAVIGCKIAGASRIIAIDIN 230          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VL+++   GVC +D     TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +C++C+ G+ NLC      + KGL           G P  H  GC       VV    L    P+        +   ++ G+ A    A + P  +V + G G IGL  + GAR   A RI+ +D +
Sbjct:   29 EVLIKVTHTGVCHTDAF---TLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTEXCGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTN 220          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 52/181 (28.73%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  151 GPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVAL-EPGISCWQCDYCKGGRYNLCPE------SKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVI 666
            G  DV  ++   G+C +D+   K       +   P+V GHE  GV+ +VG++VK    GD+V +     SC  CD C  G  N CP+      +K       HG  ++ +V   D   ++PDN+ L+  A  +C  ++V           P  ++ ++G G +G V +  A+A G    VI
Sbjct:   32 GEKDVRFKVLFCGICHTDLSMAKN---EWGLTTYPLVPGHEIVGVVTEVGAKVKKFNAGDKVGVGYMAGSCRSCDSCNDGDENYCPKMILTSGAKNFDDTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVAVKFAKAMGTKVTVI 209          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH_MYCPN (Probable NADP-dependent alcohol dehydrogenase OS=Mycoplasma pneumoniae GN=adh PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 59/186 (31.72%), Postives = 86/186 (46.24%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKG--LGS---PPVHGCLANQVVHPADL---CFKLPDNVSLEEGAM-CEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVD 672
            P  GP D ++R  AV  C SDVH   T+       +  MV+GHE  GV+++VGSEVK+   GDRV +      W     + G     P   G  LG      V   +  +  H  D       +P+ + L +  M  + +  G HA   A+I     +    +GP+GL+ + GA   GA RI++VD
Sbjct:   20 PVCGPNDAIIRPLAVAPCTSDVH---TVWEGGIGERHNMVLGHEGCGVVDEVGSEVKSFKVGDRVLVAAITPEWNSVNAQAG----YPMHSGGMLGGWKFSNVKDGMFAEYFHVNDAEGNLALMPEGMDLADACMLSDMIPTGFHANELADIQYGVALSFFCAGPVGLMAIAGAALKGAGRIIVVD 198          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 58/208 (27.88%), Postives = 93/208 (44.71%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPPVHG----CLANQVVH--------------PADLCFKLPDNVSLEEGAMCEPLSVGVHA-CRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDV 675
            L I+ +++     ++V V++    VC +D +   TL   D     P+V+GHE +G++E VG  V    PGD V       C +C+YCK  + NLC +   S+G G  P       C   Q+ H                 LC   P+    +   +   +S G  A      +   + V + G G +GL  ++GA+A GA +IV +D+
Sbjct:   23 LSIETIQVAPPKAHEVRVKILYTAVCHTDAY---TLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYCKNPKTNLCQKIRISQGNGFMPDGSSRFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGISTGYGAVLNTCKVEEGSTVAVWGLGAVGLAVIMGAKAAGAKKIVGIDL 227          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 60/217 (27.65%), Postives = 98/217 (45.16%), Query Frame = 1
Query:   94 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPPVHG----CLANQVVHPADLC----FKLPDNVSLEEGAMCEPL----------SVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            AW  G   L ++ +E+      +V +++ A GVC +D +   TL  +D     P+++GHE AG++E VG  V     GD V       C +C +CK  + NLC +   ++G G  P +     C   Q+ H         + +  ++SL       PL          S G  A    A + P +   + G G +GL  ++G +  GA RI+ VD++
Sbjct:   14 AWEAG-KPLSLEEVEVAPPRAGEVRIKVVATGVCHTDAY---TLSGSDPEGAFPVILGHEGAGLVESVGEGVTKFKAGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGRGLMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVADISLANVDPKAPLDKVCLLGCGISTGYGAALNTAKVEPGSTCAVFGLGAVGLAAIMGCKVAGATRIIGVDIN 226          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 55/184 (29.89%), Postives = 87/184 (47.28%), Query Frame = 1
Query:  145 SLGPYDVLVRMKAVGVCGSDVHFLKT-LRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCP------ESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVI 666
            S G  DV++++   G+C SD+H +K   + A +    P+V GHE AGV+ + G  V     GD+V +   + SC  CD C  G  N CP       S        +G  ++ VV       + P+ + L++GA  +C  ++V           P  +V ++G G +G V +  A+AFG    VI
Sbjct:   27 STGDDDVVIKILYCGICHSDLHSIKNEWKNATY----PLVPGHEIAGVVTEAGKNVTKFKGGDKVGVGCMVNSCHSCDSCNQGLENHCPGVIFTYNSVDKDGTVTYGGYSSMVVVHERFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVLGLGGLGHVAVKFAKAFGMTVTVI 206          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
ADH1E_HORSE1.994e-1226.42Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
DOIAD_STRKN2.604e-1231.112-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
ADHX_DROME2.604e-1228.30Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
ADH4_RAT2.604e-1226.17Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
FRMA_ECOL63.401e-1230.77S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
CADH7_ARATH3.401e-1228.73Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
ADH_MYCPN3.401e-1231.72Probable NADP-dependent alcohol dehydrogenase OS=M... [more]
ADHX_CAEEL4.441e-1227.88Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADHH_GADMO4.441e-1227.65Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]
CADH5_ORYSJ5.801e-1229.89Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
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