FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 55/179 (30.73%), Postives = 87/179 (48.60%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPES----KGL---GSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVI 666
            DV +R+   GVC +DV + + +         P+V GHE AGV+ +VG++VK+   GD V +   + SC  C+ C     N C +      G+   G+    G   + VVH    CFK+PD   LE+ A  +C  ++V     R     P  ++ ++G G +G + +   +AFG    VI
Sbjct:   36 DVSLRITHCGVCYADVAWTRNILNNSMY---PLVPGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHER-YCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVI 210          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: YYCR_BACSU (Uncharacterized zinc-type alcohol dehydrogenase-like protein yycR OS=Bacillus subtilis GN=yycR PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 59/235 (25.11%), Postives = 104/235 (44.26%), Query Frame = 1
Query:   85 NMAAWLMGVNTLKIQPLELPSL----GP------------YDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC----PESKG--LGSPPVHGCLANQ----VVHPADL-CFKLPDNVS-----LEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLS 693
            N A    G  T+ ++ +  P L    GP            + V++++    +CGSD H ++    A     E +V+GHE  G + + G +V+ +  GD V++   I+C +C  CK  + ++C    P+  G   G   + G +  Q    +V  AD      PD        L+   + +    G H    A +   + V I G+GP+GL     A+  GA  +++ D+++ RL+
Sbjct:    9 NKAVVYKGKGTVAVEDIGYPELILRDGPGVPKANVNRKCEHGVILKVITTNICGSDQHMVRGRTTAP----EGLVLGHEITGEVIETGRDVEFIKKGDIVSVPFNIACGRCVMCKTQKTHVCLNVNPDRPGSAYGYVDMGGWVGGQSEYVMVPYADFQLLVFPDKEQALEKILDLTMLSDIFPTGFHGAYTAGVQTGSTVYIAGAGPVGLAAAHSAQLLGASTVIVGDLNEDRLA 239          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 58/213 (27.23%), Postives = 88/213 (41.31%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC------------PESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACR-RANIGPETN---------VLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRL 690
            +++  + +P  GP +V   +    VC +D+    T R      + P ++GHE AG +E VG  V ++ PGD V L     C QC  CK GR   C             +   L      G  A++ +  A  C K+            +P   G+  C   A +G   N         V ++G G +G   + GAR  GA +I+ VD D  +L
Sbjct:   16 VELTDIVIPDPGPSEVTALIATCAVCHTDL----TYREGGINDEFPFLLGHEAAGTVESVGEGVDSVQPGDYVVLNWRAVCGQCRACKRGRPQYCFSTFNATQKMTLTDGTELTPALGIGAFADKTLVHAGQCTKV--------DPAADPAVAGLLGCGVMAGLGAAVNTGAVSRGDSVAVIGCGAVGDAVIAGARLAGANKIIAVDRDAKKL 216          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 56/190 (29.47%), Postives = 87/190 (45.79%), Query Frame = 1
Query:  139 LPSLGPYDVLVRMKAVGVCGSD-VHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPE------SKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            L + GP DV+VR+   G+C SD V     + ++++    PMV GHE  GV+ ++GSEVK    G+ V +   + SC  C  C G     C +             P  G  A+ +V       ++P+N+ LE+ A  +C  ++V           P     I+G G +G + +  A+AFG    VI   D
Sbjct:   29 LRNKGPEDVIVRVIYCGICHSDLVQMHNEMGMSNY----PMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSD 214          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 56/190 (29.47%), Postives = 87/190 (45.79%), Query Frame = 1
Query:  139 LPSLGPYDVLVRMKAVGVCGSD-VHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGI-SCWQCDYCKGGRYNLCPE------SKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            L + GP DV+VR+   G+C SD V     + ++++    PMV GHE  GV+ ++GSEVK    G+ V +   + SC  C  C G     C +             P  G  A+ +V       ++P+N+ LE+ A  +C  ++V           P     I+G G +G + +  A+AFG    VI   D
Sbjct:   29 LRNKGPEDVIVRVIYCGICHSDLVQMHNEMGMSNY----PMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSD 214          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 60/220 (27.27%), Postives = 100/220 (45.45%), Query Frame = 1
Query:   94 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH---GCLANQVVHPADLCF-KLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            AW  G   L I+ +E+     ++V +++ A  VC +D +   TL  AD     P+++GHE AG++E VG  V  L  GD V       C +C +C   + NLC      + KGL           G P +H       ++    AD+   K+  +  L++  +   L  G+      A   A + P +   + G G +GL  ++G +  GA RI+ +D++
Sbjct:   13 AWEAG-KPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAY---TLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCL---LGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDIN 225          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 60/220 (27.27%), Postives = 99/220 (45.00%), Query Frame = 1
Query:   94 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLANQVVH------------PADLCF-KLPDNVSLEEGAMCEPLSVGVH-----ACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            AW  G   L I+ +E+     ++V +++ A  VC +D +   TL  AD     P+++GHE AG++E VG  V  L  GD V       C +C +C   + NLC +   ++G G  P       C    V H             AD+   K+  +  L++  +   L  G+      A   A + P +   + G G +GL  ++G +  GA RI+ +D++
Sbjct:   13 AWEAG-KPLSIEEIEVAPPKAHEVRIKILATAVCHTDAY---TLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCL---LGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDIN 225          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 61/196 (31.12%), Postives = 90/196 (45.92%), Query Frame = 1
Query:  160 DVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLC-----PESKGL-----------GSPPVH--GCLANQ---VVHPADLCFKLPDNVSLEEGAMCE-PLSVGVHACRR-ANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            +VLV++   GVC +D +   TL   D     P+V+GHE AGV+ +VG  V ++ PGD V       C +CD+C  G+ NLC      + KG+           G P  H  GC       VV    L  K+    + E+  +    ++ G+ A    A +    +V + G G IGL  + GAR   A RI  +D +
Sbjct:   29 EVLVKISHTGVCHTDAY---TLSGDDPEGLFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECDFCTSGKTNLCVAVRETQGKGVMPDATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLA-KINPQANAEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGGIGLAVVQGARQAKAGRIFAIDTN 220          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 59/217 (27.19%), Postives = 98/217 (45.16%), Query Frame = 1
Query:   94 AWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPE---SKGLGSPP----VHGCLANQVVHPADLC----FKLPDNVSLEEGAMCEPL----------SVGVHAC-RRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVD 678
            AW  G   L I+ +E+     ++V +++ A  VC +D +   TL  AD     P+++GHE AG++E VG  V  L  GD V       C +C +C   + NLC +   ++G G  P       C    ++H         + +  ++S+ +     PL          S G  A    A + P +   + G G +GL  ++G +  GA RI+ VD++
Sbjct:   13 AWEAG-KPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAY---TLSGADPEGNYPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAALNAAKVEPGSTCAVFGLGGVGLAVIMGCKMAGAARIIGVDIN 225          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: ADH1_EMENI (Alcohol dehydrogenase 1 OS=Emericella nidulans GN=alcA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 56/192 (29.17%), Postives = 93/192 (48.44%), Query Frame = 1
Query:  118 LKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALE-PGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGA--MCEPLSVGVHACRRANIGPETNVLIMGS-GPIGLVTMLGARAFGAPRIVIVDVDD 681
            L  + + +P  GP  +LV+++  GVC +D+H +  +      VK P+V GHE AG++   G  V     GD+  ++    SC +C++C+     LC  ++ L    V G      +  A    K+P  V L+  A  +C  ++V     + A + P   V I+G+ G +G +    A+A G  R+V VD  D
Sbjct:   19 LVYKQIPVPKPGPDQILVKIRYSGVCHTDLHAM--MGHWPIPVKMPLVGGHEGAGIVVAKGELVHEFEIGDQAGIKWLNGSCGECEFCRQSDDPLCARAQ-LSGYTVDGTFQQYALGKASHASKIPAGVPLDAAAPVLCAGITV-YKGLKEAGVRPGQTVAIVGAGGGLGSLAQQYAKAMGI-RVVAVDGGD 205          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
CADH1_ORYSJ5.801e-1230.73Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
YYCR_BACSU7.576e-1225.11Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
FADH_AMYME7.576e-1227.23NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
CADH7_PICAB7.576e-1229.47Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH2_PICAB7.576e-1229.47Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
ADHX_RAT7.576e-1227.27Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADHX_MOUSE7.576e-1227.27Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
FRMA_PASPI9.894e-1231.12S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADHX_BOVIN9.894e-1227.19Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADH1_EMENI9.894e-1229.17Alcohol dehydrogenase 1 OS=Emericella nidulans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
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