FC868560

Overview
NameFC868560
Unique NameFC868560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:17..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_PSEA6 (L-threonine 3-dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=tdh PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 67/187 (35.83%), Postives = 108/187 (57.75%), Query Frame = 1
Query:  136 ELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            E+P++G  D+L++++   +CG+D+H       +   +  PMV+GHE  G + ++G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G     G  A  +  PA   FK+PDN+S +  A+ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   19 EMPTVGHNDILIKIRKTAICGTDMHIYNWDEWSQNTIPVPMVVGHEYVGEVVEIGEEVRGFAIGDRVSGEGHITCGHCRNCRAGRRHLCRNTSGVGVNRA-GAFAEYLSIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAQHVGARHVVITDVNEYRLDL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_VIBVY (L-threonine 3-dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=tdh PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 69/188 (36.70%), Postives = 108/188 (57.45%), Query Frame = 1
Query:  133 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            ++ P LG  D+L+++K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     GC +  +V PA   FK+P N+S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   20 VDKPVLGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPANISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDL 205          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_VIBVU (L-threonine 3-dehydrogenase OS=Vibrio vulnificus GN=tdh PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 69/188 (36.70%), Postives = 108/188 (57.45%), Query Frame = 1
Query:  133 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            ++ P LG  D+L+++K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     GC +  +V PA   FK+P N+S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   20 VDKPVLGHNDLLIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRT-GCFSEYLVIPAFNAFKIPANISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDL 205          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_AERS4 (L-threonine 3-dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=tdh PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 72/186 (38.71%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P LG  D+L++++   +CG+D+H       A   +  PMV+GHE  G +  VG EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G + P  G  A  +V PA   FKLPDN+  E  A+ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PELGHNDLLIKIRKTAICGTDMHIYNWDEWAQKTIPVPMVVGHEYVGEVVAVGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GSFAEYLVIPAFNAFKLPDNIPDELAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_AERHH (L-threonine 3-dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tdh PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 71/186 (38.17%), Postives = 105/186 (56.45%), Query Frame = 1
Query:  142 PSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLG-SPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            P LG  D+L++++   +CG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+ GR +LC  + G+G + P  G  A  +V PA   FKLPDNV  E  A+ +P    VH     ++  E +VLI G+GPIG++     R  GA  +VI DV++YRL +
Sbjct:   21 PELGHNDLLIKIRKTAICGTDIHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GAFAEYLVIPAFNAFKLPDNVPDELAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLEL 203          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_VIBPA (L-threonine 3-dehydrogenase OS=Vibrio parahaemolyticus GN=tdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 68/188 (36.17%), Postives = 107/188 (56.91%), Query Frame = 1
Query:  133 LELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            ++ P +G  D+L+++K   +CG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C  C+GGR +LC  + G+G     G  A  +V PA   FK+PD +S +  ++ +P    VH     ++  E +VLI G+GPIG++    A+  GA  +VI DV++YRL +
Sbjct:   20 VDKPEVGHNDILIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNR-EGAFAEYLVIPAFNAFKIPDEISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLEL 205          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_FRATW (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 70/191 (36.65%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            I    +P  G  DVL+++K   +CG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C QC  C+ G+ +LC ++ G+G   V G  A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI G+GPIGL+ +  AR  GA RIVI D+++YRL +
Sbjct:   16 INDAPIPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQM 204          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_FRATT (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis GN=tdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 70/191 (36.65%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            I    +P  G  DVL+++K   +CG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C QC  C+ G+ +LC ++ G+G   V G  A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI G+GPIGL+ +  AR  GA RIVI D+++YRL +
Sbjct:   16 INDAPIPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQM 204          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_FRATO (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 70/191 (36.65%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            I    +P  G  DVL+++K   +CG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C QC  C+ G+ +LC ++ G+G   V G  A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI G+GPIGL+ +  AR  GA RIVI D+++YRL +
Sbjct:   16 INDAPIPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQM 204          
BLAST of FC868560 vs. ExPASy Swiss-Prot
Match: TDH_FRATN (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. novicida (strain U112) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 70/191 (36.65%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  124 IQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGAPRIVIVDVDDYRLSV 696
            I    +P  G  DVL+++K   +CG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C QC  C+ G+ +LC ++ G+G   V G  A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI G+GPIGL+ +  AR  GA RIVI D+++YRL +
Sbjct:   16 IDDAPIPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQM 204          
The following BLAST results are available for this feature:
BLAST of FC868560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 320
Match NameE-valueIdentityDescription
TDH_PSEA61.795e-2935.83L-threonine 3-dehydrogenase OS=Pseudoalteromonas a... [more]
TDH_VIBVY3.061e-2936.70L-threonine 3-dehydrogenase OS=Vibrio vulnificus (... [more]
TDH_VIBVU3.061e-2936.70L-threonine 3-dehydrogenase OS=Vibrio vulnificus G... [more]
TDH_AERS43.998e-2938.71L-threonine 3-dehydrogenase OS=Aeromonas salmonici... [more]
TDH_AERHH3.998e-2938.17L-threonine 3-dehydrogenase OS=Aeromonas hydrophil... [more]
TDH_VIBPA5.222e-2936.17L-threonine 3-dehydrogenase OS=Vibrio parahaemolyt... [more]
TDH_FRATW5.222e-2936.65L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATT5.222e-2936.65L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATO5.222e-2936.65L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATN5.222e-2936.65L-threonine 3-dehydrogenase OS=Francisella tularen... [more]

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Properties
Property NameValue
Genbank descriptionC31001H08EF AbioticL1 Citrus clementina cDNA clone C31001H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868560 ID=FC868560; Name=FC868560; organism=Citrus clementina; type=EST; length=697bp
GGCACTTGTGTTTTTGAAGAGTGCAAAGCAAATATGGGCAAGGGAGGGAT
GTCACAAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGC
TTATGGGTGTCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTG
GGACCTTATGATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAG
TGATGTGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAG
AGCCTATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGA
AGCGAGGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGG
GATCAGCTGCTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGT
GTCCAGAGTCGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCT
AATCAGGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGT
CAGCCTGGAGGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATG
CCTGCCGCCGTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGA
TCAGGGCCCATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGC
TCCTAGAATTGTCATTGTGGATGTGGATGACTATCGTTTATCTGTTG
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