FC868664 | Citrus Genome Database

Overview


Name	FC868664
Unique Name	FC868664
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	702

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC868664 vs. ExPASy Swiss-Prot
Match: CATA1_ORYSJ (Catalase isozyme A OS=Oryza sativa subsp. japonica GN=CATA PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.621e-54
Identity = 88/111 (79.28%), Postives = 97/111 (87.39%), Query Frame = 1

Query:   79 PTDVTKWWPEDIIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVLSFYFP 411
            P D TK WPED +PL+PVGRLVLN+N+DNFF ENE LAF PG+VVPGIYYS+DKMLQCR+FAY DTQR+RLGPNYLMLPVNAPKC H NNHYDG MNFMHRDEEV   Y+P
Sbjct:  286 PLDDTKTWPEDEVPLRPVGRLVLNRNVDNFFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCAHHNNHYDGAMNFMHRDEEV--DYYP 394

HSP 2 Score: 38.5058 bits (88), Expect = 5.621e-54
Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = 2

Query:   17 PEWKLYIQTIDPDHEDQFVSDPL 85
            PEWKL++Q IDP+ E++F  DPL
Sbjct:  265 PEWKLFVQVIDPEEEERFDFDPL 287

[Close]

BLAST of FC868664 vs. ExPASy Swiss-Prot
Match: CATA1_ORYSI (Catalase isozyme A OS=Oryza sativa subsp. indica PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.621e-54
Identity = 88/111 (79.28%), Postives = 97/111 (87.39%), Query Frame = 1

Query:   79 PTDVTKWWPEDIIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVLSFYFP 411
            P D TK WPED +PL+PVGRLVLN+N+DNFF ENE LAF PG+VVPGIYYS+DKMLQCR+FAY DTQR+RLGPNYLMLPVNAPKC H NNHYDG MNFMHRDEEV   Y+P
Sbjct:  286 PLDDTKTWPEDEVPLRPVGRLVLNRNVDNFFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCAHHNNHYDGAMNFMHRDEEV--DYYP 394

HSP 2 Score: 38.5058 bits (88), Expect = 5.621e-54
Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = 2

Query:   17 PEWKLYIQTIDPDHEDQFVSDPL 85
            PEWKL++Q IDP+ E++F  DPL
Sbjct:  265 PEWKLFVQVIDPEEEERFDFDPL 287

[Close]

BLAST of FC868664 vs. ExPASy Swiss-Prot
Match: CATA2_ARATH (Catalase-2 OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 5.621e-54
Identity = 88/111 (79.28%), Postives = 98/111 (88.29%), Query Frame = 1

Query:   79 PTDVTKWWPEDIIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVLSFYFP 411
            P DVTK WPEDI+PLQPVGR+VLNKNIDNFFAENE LAF P I+VPGI+YS+DK+LQ R+F+Y DTQRHRLGPNYL LPVNAPKC H NNH++GFMNFMHRDEEV   YFP
Sbjct:  286 PLDVTKTWPEDILPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIHYSDDKLLQTRVFSYADTQRHRLGPNYLQLPVNAPKCAHHNNHHEGFMNFMHRDEEV--NYFP 394

HSP 2 Score: 38.891 bits (89), Expect = 5.621e-54
Identity = 16/24 (66.67%), Postives = 19/24 (79.17%), Query Frame = 2

Query:   14 HPEWKLYIQTIDPDHEDQFVSDPL 85
            +PEWKL+IQ IDP  ED+F  DPL
Sbjct:  264 YPEWKLFIQIIDPADEDKFDFDPL 287

[Close]

BLAST of FC868664 vs. ExPASy Swiss-Prot
Match: CATA2_GOSHI (Catalase isozyme 2 OS=Gossypium hirsutum GN=CAT2 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 7.327e-54
Identity = 87/111 (78.38%), Postives = 96/111 (86.49%), Query Frame = 1

Query:   79 PTDVTKWWPEDIIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVLSFYFP 411
            P DVTK WPEDI PLQP+GR+VLNKNIDNFFAENE LAF P ++VPGIYYS+DK+LQ RIF+Y DTQRHRLGPNYL LP NAPKC H NNH++GFMNFMHRDEEV   YFP
Sbjct:  286 PLDVTKTWPEDIFPLQPMGRMVLNKNIDNFFAENEQLAFCPSLIVPGIYYSDDKLLQTRIFSYSDTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEV--NYFP 394

HSP 2 Score: 40.4318 bits (93), Expect = 7.327e-54
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 2

Query:   14 HPEWKLYIQTIDPDHEDQFVSDPL 85
            +PEWKL+IQ +DP HED+F  DPL
Sbjct:  264 YPEWKLFIQIMDPLHEDRFDFDPL 287

[Close]

BLAST of FC868664 vs. ExPASy Swiss-Prot
Match: CATA_PEA (Catalase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 9.551e-54
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 1

Query:   79 PTDVTKWWPEDIIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVLSFYFP 411
            P DVTK WPEDIIPLQPVGR+VLNKNIDNFFAENE LAF P I++PGIYYS+DKMLQ R+F+Y D+QRHRLGPNYL LPVNAPK  H NNH++GFMN +HRDEEV   YFP
Sbjct:  286 PLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFCPAIMLPGIYYSDDKMLQTRVFSYADSQRHRLGPNYLQLPVNAPKWSHHNNHHEGFMNAIHRDEEV--NYFP 394

HSP 2 Score: 46.595 bits (109), Expect = 9.551e-54
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 2

Query:   14 HPEWKLYIQTIDPDHEDQFVSDPL 85
            +PEWKLYIQTIDP HED+F  DPL
Sbjct:  264 YPEWKLYIQTIDPAHEDRFEFDPL 287

[Close]

BLAST of FC868664 vs. ExPASy Swiss-Prot
Match: CATA3_MAIZE (Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.758e-53
Identity = 86/111 (77.48%), Postives = 98/111 (88.29%), Query Frame = 1

Query:   79 PTDVTKWWPEDIIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVLSFYFP 411
            P D TK WPED++PL+PVGRLVL++N+DNFF ENE LAF PG+VVPGIYYS+DKMLQCR+FAY DTQR+RLGPNYLMLPVNAP+C H NNHYDG MNFMHRDEEV   Y+P
Sbjct:  289 PLDDTKTWPEDLLPLRPVGRLVLDRNVDNFFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPRCAHHNNHYDGAMNFMHRDEEV--DYYP 397

HSP 2 Score: 37.7354 bits (86), Expect = 2.758e-53
Identity = 14/23 (60.87%), Postives = 18/23 (78.26%), Query Frame = 2

Query:   17 PEWKLYIQTIDPDHEDQFVSDPL 85
            PEW LY+Q +DPD E+Q+  DPL
Sbjct:  268 PEWTLYVQVMDPDTEEQYDFDPL 290

[Close]

BLAST of FC868664 vs. ExPASy Swiss-Prot
Match: CATA2_RICCO (Catalase isozyme 2 OS=Ricinus communis GN=CAT2 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.687e-53
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 1

Query:   79 PTDVTKWWPEDIIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEV 393
            P D+TK WPED+ PL PVGRLVLN+NIDN+FAENEMLAFNP  VVPG+YYSNDK+ Q R+FAY DTQRHRLG NYL LPVNAPKCP+ NNHYDGFMNFMHRDEEV
Sbjct:  286 PLDMTKIWPEDMFPLHPVGRLVLNRNIDNWFAENEMLAFNPAHVVPGVYYSNDKLFQLRLFAYSDTQRHRLGTNYLQLPVNAPKCPYHNNHYDGFMNFMHRDEEV 390

HSP 2 Score: 38.1206 bits (87), Expect = 4.687e-53
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 2

Query:   17 PEWKLYIQTIDPDHEDQFVSDPL 85
            PEWKL IQT+DP  ED+F  DPL
Sbjct:  265 PEWKLMIQTMDPADEDKFSFDPL 287

[Close]

BLAST of FC868664 vs. ExPASy Swiss-Prot
Match: CATA1_ARATH (Catalase-1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 6.110e-53
Identity = 88/111 (79.28%), Postives = 97/111 (87.39%), Query Frame = 1

Query:   79 PTDVTKWWPEDIIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVLSFYFP 411
            P DVTK WPEDI+PLQPVGRLVLNKNIDNFF ENE +AF P +VVPGI+YS+DK+LQ RIF+Y D+QRHRLGPNYL LPVNAPKC H NNH+DGFMNFMHRDEEV   YFP
Sbjct:  286 PLDVTKIWPEDILPLQPVGRLVLNKNIDNFFNENEQIAFCPALVVPGIHYSDDKLLQTRIFSYADSQRHRLGPNYLQLPVNAPKCAHHNNHHDGFMNFMHRDEEV--NYFP 394

HSP 2 Score: 38.1206 bits (87), Expect = 6.110e-53
Identity = 13/24 (54.17%), Postives = 19/24 (79.17%), Query Frame = 2

Query:   14 HPEWKLYIQTIDPDHEDQFVSDPL 85
            +P+W L++Q +DP HED+F  DPL
Sbjct:  264 YPQWNLFVQVMDPAHEDKFDFDPL 287

[Close]

BLAST of FC868664 vs. ExPASy Swiss-Prot
Match: CATA_SECCE (Catalase OS=Secale cereale PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.110e-53
Identity = 86/111 (77.48%), Postives = 97/111 (87.39%), Query Frame = 1

Query:   79 PTDVTKWWPEDIIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVLSFYFP 411
            P D TK WPED++PLQPVGRLVL++N+DNFF ENE LAF PG+VVPGIYYS+DKMLQCR+FAY DTQR+RLGPNYLMLPVNAPKC  + NHYDG MNFMHRDEEV   Y+P
Sbjct:  285 PLDDTKTWPEDLVPLQPVGRLVLDRNVDNFFNENEQLAFGPGLVVPGIYYSDDKMLQCRVFAYADTQRYRLGPNYLMLPVNAPKCGFKKNHYDGAMNFMHRDEEV--DYYP 393

HSP 2 Score: 38.891 bits (89), Expect = 6.110e-53
Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = 2

Query:   17 PEWKLYIQTIDPDHEDQFVSDPL 85
            PEWKL++Q IDP+ +D+F  DPL
Sbjct:  264 PEWKLFVQVIDPEQQDRFDFDPL 286

[Close]

BLAST of FC868664 vs. ExPASy Swiss-Prot
Match: CATA_SOLME (Catalase OS=Solanum melongena PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.764e-52
Identity = 85/105 (80.95%), Postives = 92/105 (87.62%), Query Frame = 1

Query:   79 PTDVTKWWPEDIIPLQPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEV 393
            P DVTK WPEDI+PL PVGRLVLN+NIDNFFAENE LAFNPG +VPG+YYS DK+LQ RIFAY DTQRHR+GPNY+ LPVNAPKC H NNH DG MNFMHRDEEV
Sbjct:  286 PLDVTKTWPEDILPLMPVGRLVLNRNIDNFFAENEQLAFNPGHIVPGVYYSEDKLLQTRIFAYADTQRHRIGPNYMQLPVNAPKCAHHNNHRDGAMNFMHRDEEV 390

HSP 2 Score: 36.5798 bits (83), Expect = 1.764e-52
Identity = 14/24 (58.33%), Postives = 19/24 (79.17%), Query Frame = 2

Query:   14 HPEWKLYIQTIDPDHEDQFVSDPL 85
            +PEWKL+IQ +DP+  D+F  DPL
Sbjct:  264 YPEWKLFIQIMDPEDVDKFDFDPL 287

The following BLAST results are available for this feature:

BLAST of FC868664 vs. ExPASy Swiss-Prot

BLAST of FC868664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141


Match Name	E-value	Identity	Description
CATA1_ORYSJ	5.621e-54	79.28	Catalase isozyme A OS=Oryza sativa subsp. japonica...	[more]
CATA1_ORYSI	5.621e-54	79.28	Catalase isozyme A OS=Oryza sativa subsp. indica P...	[more]
CATA2_ARATH	5.621e-54	79.28	Catalase-2 OS=Arabidopsis thaliana GN=CAT2 PE=1 SV...	[more]
CATA2_GOSHI	7.327e-54	78.38	Catalase isozyme 2 OS=Gossypium hirsutum GN=CAT2 P...	[more]
CATA_PEA	9.551e-54	77.48	Catalase OS=Pisum sativum PE=2 SV=1	[more]
CATA3_MAIZE	2.758e-53	77.48	Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2	[more]
CATA2_RICCO	4.687e-53	80.95	Catalase isozyme 2 OS=Ricinus communis GN=CAT2 PE=...	[more]
CATA1_ARATH	6.110e-53	79.28	Catalase-1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV...	[more]
CATA_SECCE	6.110e-53	77.48	Catalase OS=Secale cereale PE=2 SV=1	[more]
CATA_SOLME	1.764e-52	80.95	Catalase OS=Solanum melongena PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C31003C03EF AbioticL1 Citrus clementina cDNA clone C31003C03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC868664 ID=FC868664; Name=FC868664; organism=Citrus clementina; type=EST; length=702bp
TTGCAGCTGGAAACATCCTGAGTGGAAACTCTACATTCAGACTATTGATC
CCGATCACGAGGACCAATTTGTCTCTGACCCACTGACGTAACCAAGTGGT
GGCCTGAGGACATCATCCCTCTGCAGCCAGTTGGACGCTTGGTCTTGAAC
AAGAACATCGATAATTTCTTTGCGGAAAATGAAATGCTTGCATTTAACCC
TGGTATCGTGGTTCCTGGGATCTACTACTCAAATGATAAGATGCTCCAAT
GTCGAATCTTTGCCTATGGTGATACCCAGAGGCATCGCCTTGGACCCAAC
TACTTGATGCTTCCAGTTAATGCACCCAAATGTCCTCATCGCAACAATCA
TTATGATGGTTTCATGAATTTCATGCACAGGGATGAGGAGGTACTTAGTT
TCTACTTTCCCCCCTGGAAACAAAATTTATGAATCAAAATAGGCTCGGCA
CCTATAATCTATCCACATTTATCTTAACTTAGATAATGGTGCATGTCTTA
AAGATACAAGTGCTTAGTACAAGTGGATGGTATCAGAATCTAACCTGTTG
TGTGCTAGTGTTATAAAAAAATGCTCTAATTGGATATTATGATGCTTTGT
TTTAGGTCGATTACTTTCCTTCGAGGTATGATCCTACTCGTCATGCTGAG
AGATATCCCATTCCTTCTGATGTAATTACAGGAAGGCGTGAGAAGGCTTG
CA