FC868665

Overview
NameFC868665
Unique NameFC868665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15251 contig Ccv1_Contig15251:12..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 261.151 bits (666), Expect = 3.402e-69
Identity = 128/180 (71.11%), Postives = 145/180 (80.56%), Query Frame = 1
Query:  100 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLIL+LRNRLKYALT +EV  ILMQR V VD KVRTD  YPAGFMDV+SI KT ENFRLL+D KGRF L  I  EEAKFKL +V  V+ G +GIPY++T DGRTIRYPDP I  +DTIK+D+E+ KIT FI F+V N+
Sbjct:    1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNL 180          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3)

HSP 1 Score: 259.225 bits (661), Expect = 1.293e-68
Identity = 125/180 (69.44%), Postives = 145/180 (80.56%), Query Frame = 1
Query:  100 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQ  + +D KVR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KIT FIKFD GNV
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 180          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.688e-68
Identity = 123/180 (68.33%), Postives = 147/180 (81.67%), Query Frame = 1
Query:  100 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RE LPL++ LRNRLKYALT  EV  I+MQR + VD KVRTD  YP+GFMDV++I KT E FRL+YD KGRF +H I  EEAK+KLCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK NDTI+L++  +KI + IKFD GN+
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNL 180          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 8.379e-68
Identity = 121/180 (67.22%), Postives = 147/180 (81.67%), Query Frame = 1
Query:  100 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            MARG KKHLKRL APK WMLDKLGG FAP+PS+GPHK RE LPL++ LRNRLKYAL   EV  I+MQR V VD KVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H I  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+ + KIT++IKFD GN+
Sbjct:    1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.005e-66
Identity = 120/181 (66.30%), Postives = 142/181 (78.45%), Query Frame = 1
Query:  100 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVV 642
            M RG KKHLKRL AP HWML KL G +AP+PS+GPH  RE LPL + LRNRL YAL  REV AI+MQ+HV V  KVRTD TYPAGFMDV+++  TNE+FRL YD KG+F +H I  EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL T KI  FIKFD G +V
Sbjct:    1 MGRGPKKHLKRLAAPSHWMLXKLSGTYAPRPSAGPHXLRESLPLXVFLRNRLXYALCGREVKAIMMQQHVQVVGKVRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLV 181          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.136e-63
Identity = 116/161 (72.05%), Postives = 133/161 (82.61%), Query Frame = 1
Query:  157 LDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            LDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +D KVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+
Sbjct:    1 LDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 161          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.692e-60
Identity = 114/178 (64.04%), Postives = 134/178 (75.28%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            RG KKHLKRL AP HWMLDKLGG FA +P+ GPHK RE LPL L LRNRLKYAL Y E   IL QR V VD KVRT   +P GFMDVV+I +TNE FR+LYDTKGR+ +H I+  EA FKLCKV+SV+   KG+P + T DGRTIRYPDP +K NDTI  ++ T KIT+ +KF+ GN+
Sbjct:    2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNL 179          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.617e-53
Identity = 107/181 (59.12%), Postives = 129/181 (71.27%), Query Frame = 1
Query:  103 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQR--HVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            ARG KKHLKR+NAPK WML+KLGG +A +PS GPHK RE LPL ++L+ RL YAL  R+V  IL  +  +V VD KVR DK YP G MDVV I KT+++FR+LYDTKGRF L S+  EEAK+KL KV +   G   IPYI T+D RTIR+P+P IK  DT+K DL  NKI  F   + GNV
Sbjct:    1 ARGPKKHLKRINAPKSWMLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEGNVFVDQKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNV 181          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.647e-39
Identity = 81/173 (46.82%), Postives = 115/173 (66.47%), Query Frame = 1
Query:  100 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFI 618
            M  G + HLKR  APK WMLDK GG FA  P+SGPHK  EC+PL  ++   L+YA  ++E+  IL ++++ V+ +VRT+  +P G  DVVSI KT E+FR+LY+   +F LH I  EEA ++L KV + ++  +GIPYI +  G +IR+ DP I    TIK+  ET+K+ E+I
Sbjct:    1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYI 172          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 74/186 (39.78%), Postives = 104/186 (55.91%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNV 639
            +G K+HLKRL AP  W L +    F  +P  G H   E LPL+LI+R+ LKYA   RE   I+    VLVD +VR ++  P G MDVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N +DGR   I+  DP      + K  DT+ + +   +I   I F+VG +
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKL 187          
The following BLAST results are available for this feature:
BLAST of FC868665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_DICDI3.402e-6971.1140S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4Y2_HUMAN1.293e-6869.4440S ribosomal protein S4, Y isoform 2 OS=Homo sapi... [more]
RS4_CARGR1.688e-6868.3340S ribosomal protein S4 OS=Carabus granulatus GN=... [more]
RS4_DROME8.379e-6867.2240S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4_CANAL6.005e-6666.3040S ribosomal protein S4 OS=Candida albicans GN=RP... [more]
RS4_HORSE2.136e-6372.0540S ribosomal protein S4 (Fragment) OS=Equus cabal... [more]
RS4_CAEEL1.692e-6064.0440S ribosomal protein S4 OS=Caenorhabditis elegans... [more]
RS4_TETTH2.617e-5359.1240S ribosomal protein S4 OS=Tetrahymena thermophil... [more]
RS4_ENCCU1.647e-3946.8240S ribosomal protein S4 OS=Encephalitozoon cunicu... [more]
RS4E_METJA7.667e-2939.7830S ribosomal protein S4e OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionC31003C04EF AbioticL1 Citrus clementina cDNA clone C31003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868665 ID=FC868665; Name=FC868665; organism=Citrus clementina; type=EST; length=644bp
AGCTAGCAGCGCCTTCGAGTGCATTTAACACTTCGTTTTTGTTTTGCAGG
ACTGTGACACGCCGTTGGCGAATCCACGCTCAGGCTCACGAACACAAAAA
TGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCAC
TGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGG
GCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGCAACC
GCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAA
CGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGC
TGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTC
TCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAG
GAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAA
GGGAATCCCTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAG
ACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAAC
AAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGAT
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