FC868665

Overview
NameFC868665
Unique NameFC868665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15251 contig Ccv1_Contig15251:12..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 62/166 (37.35%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNK 603
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR     + ++K +D  K + +  K
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGR-----NQIVKVSDATKAEEDVYK 162          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.717e-25
Identity = 62/166 (37.35%), Postives = 97/166 (58.43%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNK 603
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR     + ++K +D  K + +  K
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGR-----NQIVKVSDATKAEEDVYK 162          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.772e-25
Identity = 70/190 (36.84%), Postives = 102/190 (53.68%), Query Frame = 1
Query:  100 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVV 642
            MAR G KKHLK L APK W + +    +A KPS GPH    C PL++I+R+ L YA T RE   ++ + H  VD +VR +  YP G MDV+ I  T E +R++        L  I  EEAK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ +   +I  +I  D G +V
Sbjct:    1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLV 190          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 66/183 (36.07%), Postives = 103/183 (56.28%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVV 642
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MDVVSIP+T E++R+L +  G+  LH I ++EA  K  ++R+ +  +     +N +DG     +I   D     + T+ + +   +I E + F+ G  V
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYF-TSYTVLMKVPEREILEVLPFEKGAYV 185          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.146e-24
Identity = 63/178 (35.39%), Postives = 98/178 (55.06%), Query Frame = 1
Query:  109 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVV 642
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+LI+R+ LK A T RE   I+  + +LVD K R D  +  G MDV+SIP+   N+R++ D     RL  I   E+K KL KV   +  + G   + ++DGR        +K  D++ ++L +  + + ++FD G+ V
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSV 182          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.954e-24
Identity = 65/178 (36.52%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  109 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVV 642
            G +KHLK   APK W +      +  KPS+G H     L L L++R+ LK A   RE   I+   +VLVD +V  D  +P GFMD++ IPKT E +R+L D KGR +L+ I  EE   KLCK+ +    + G   +N +DG+ +   +      D I L +  ++I E  +   G  V
Sbjct:    5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.354e-24
Identity = 60/175 (34.29%), Postives = 98/175 (56.00%), Query Frame = 1
Query:  106 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDV 630
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR     + ++K +D  K + +  K  + +   +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGR-----NQIVKVSDAAKAEEDVYKTGDSVLISI 171          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.699e-24
Identity = 69/189 (36.51%), Postives = 101/189 (53.44%), Query Frame = 1
Query:  100 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLETNKITEFIKFDVGNV 639
            MAR G ++ LK L AP+ W + +    +A KP  GPH + + LPL+LI+RN L YA T RE   ++ + H  VD  VR D  +P GFMDV+ +  T E FR+L      F+LH I +EE   K  ++ +    + G   +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G +
Sbjct:    1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAI 189          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.654e-23
Identity = 63/190 (33.16%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  109 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDL------ETNKITEFIKFDVG 633
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VD  VR +  +P G MDVV IP+T + +R++ +   R  +  I +EEA+ K+C++++  + + G   I  +DG+   +   DP      +    D++ L+L      E+ K+ + I F+ G
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEG 196          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.211e-23
Identity = 61/177 (34.46%), Postives = 103/177 (58.19%), Query Frame = 1
Query:  112 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVV 642
            ++ H KRL+APK + + +    +  KPS GPH ++E +PL++++R+ L+ A T RE   I+    +LVD  VR D  +P G  DVV+IPK  +++R+L+D KGR+    +  E+A  KL K+ +    + G   +N +DG  I   +   K  D+I L +   ++ + +KF+ G +V
Sbjct:    2 IELHQKRLSAPKTYKIPRKVSKWVVKPSPGPH-NKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALV 174          
The following BLAST results are available for this feature:
BLAST of FC868665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METM76.717e-2537.3530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM66.717e-2537.3530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_STAMF8.772e-2536.8430S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_PYRFU1.146e-2436.0730S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_KORCO1.146e-2435.3930S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_METS31.954e-2436.5230S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_METMP4.354e-2434.2930S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_AERPE9.699e-2436.5130S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_METKA1.654e-2333.1630S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_ARCFU8.211e-2334.4630S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionC31003C04EF AbioticL1 Citrus clementina cDNA clone C31003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868665 ID=FC868665; Name=FC868665; organism=Citrus clementina; type=EST; length=644bp
AGCTAGCAGCGCCTTCGAGTGCATTTAACACTTCGTTTTTGTTTTGCAGG
ACTGTGACACGCCGTTGGCGAATCCACGCTCAGGCTCACGAACACAAAAA
TGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCAC
TGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGG
GCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGCAACC
GCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAA
CGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGC
TGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTC
TCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAG
GAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAA
GGGAATCCCTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAG
ACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAAC
AAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGAT
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