FC868665
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22 Identity = 64/175 (36.57%), Postives = 92/175 (52.57%), Query Frame = 1 Query: 121 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVG 633 HL+R AP W + K+GG + + S GPH LPL +I+R+ LKYA T RE I+ + +V +D +R D +P G MDVV I T E +R++ D K + L I EEA KL +V + G ++ +DGR + + IK DT+ DL+ I I F +G Sbjct: 3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLG 177
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21 Identity = 59/174 (33.91%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVV 642 HLKR+ AP+ W + + + KP G H +PL+++LR+ LK A E+ IL + VLVD KVR D Y G D +SIP N N+R++ G+F L + D A K+CK+ + + G +N +DG T+ + K D++ L + KI + + VG++V Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLV 175
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.186e-21 Identity = 59/173 (34.10%), Postives = 89/173 (51.45%), Query Frame = 1 Query: 121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639 H KRL+ PK W + K G + GPH LPL +I+R+ LK RE IL + VLVD R D +P G DV+++P NE +R+L D KGR LH + + KLC++ + + G +N DG I + D++ L + ++ + +KF+VGN+ Sbjct: 3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNL 173
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.641e-21 Identity = 60/175 (34.29%), Postives = 92/175 (52.57%), Query Frame = 1 Query: 121 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVG 633 HL+R +P W + K GG +A +PS GPH +PL L++R+ L+YA T RE I+ + ++ VD VR + +P G MDVV I T E +R++ D + + L I EEA KL +V + G ++ +DGR + P IK D++ DL+ + I +G Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLG 177
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.450e-21 Identity = 67/177 (37.85%), Postives = 90/177 (50.85%), Query Frame = 1 Query: 121 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLETNKITEFIKFDVGNV 639 HL+R AP W + K GG + KPS GPH LPL +++R+ L+YA T RE I+ + ++ VD VR D +P G MDV+ I T E +R++ D + L I EA KL +V G ++ +DGR I PD IK DTI DLE I I +G V Sbjct: 3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVV 179
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.505e-21 Identity = 58/183 (31.69%), Postives = 95/183 (51.91%), Query Frame = 1 Query: 109 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLETNKITEFIKFDVG 633 G +HLK +NAP++W + + + K S GPH LPL++++R+ L YA T +E ++ + + +D +VR D +P G MDV+ I N+ +R++ L I EEA FKLC++ + + G +N +DGR IR DP DT +KL + +I +++ G Sbjct: 5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEG 187
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.505e-21 Identity = 55/168 (32.74%), Postives = 90/168 (53.57%), Query Frame = 1 Query: 121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT---IKLDLETNKITEF 615 HL+R +P+ W +++ G ++ KPS GPH + +PL ++LR+ YA T RE I+ + +V VD KVR D YP G MDV+ + NE +R++ D R I EA K+C++ + G +N +DGR I + +T + ++LE K+ ++ Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDY 170
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.311e-20 Identity = 58/173 (33.53%), Postives = 88/173 (50.87%), Query Frame = 1 Query: 121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639 H KRL+ PK W + + G + GPH LPL LI+R+ LK RE IL + VLVD R D +P G DV+++P NE +R+L D KGR L+ + + KLC++ + + G +N DG I + D++ L + + + +KF+VGN+ Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNL 173
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.712e-20 Identity = 64/190 (33.68%), Postives = 101/190 (53.16%), Query Frame = 1 Query: 100 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVG 633 MAR G K+HLKRL AP W + + +A KP GPH E +PL++++R+ L YA T RE ++ + + VD +VR D +P G MDV+ I +E +R++ Y K + I EEAK K+C++ + + G +N +DGR IR DP K + + + +I +++ F+ G Sbjct: 1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEG 189
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.236e-20 Identity = 64/175 (36.57%), Postives = 87/175 (49.71%), Query Frame = 1 Query: 121 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLIKANDTIKLDLETNKITEFIKFDVG 633 HL+R AP W + K GG + +PS GPH LPL LI+R+ LKYA T E I+ + +V VD VR D +P G MDV+ I T E +R++ D + L I EEA KL +V + G ++ +DGR T IK D++ DL I I +G Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLG 177 The following BLAST results are available for this feature:
BLAST of FC868665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868665 ID=FC868665; Name=FC868665; organism=Citrus clementina; type=EST; length=644bpback to top |