FC868665

Overview
NameFC868665
Unique NameFC868665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15251 contig Ccv1_Contig15251:12..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.920e-20
Identity = 61/177 (34.46%), Postives = 91/177 (51.41%), Query Frame = 1
Query:  121 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLETNKITEFIKFDVGNV 639
            HL++  AP  W +  K GG +A +PS+GPH     LPL +++R+ L+YA T RE   I+ + ++ VD  VR D  +P G MDVV I  T E +R++ D    + L  I   EA  K  +V        G   ++ +DGR +  P  +   IK  DT+  DLE   I   +   +G +
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQL 179          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.981e-20
Identity = 58/173 (33.53%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNV 639
            H KRL+ P+ W   K G  +      GPH     LPL +I+R+ LK     RE   IL +  VLVD   R D  +P G  DV+++P  NE +R+  D KGR  LH +       KLC++ +    + G   +N  DG  I   +      D++ L L   +I + ++F VGN+
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNE-YSTKDSLILSLPDKQIVKHLQFKVGNL 173          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.449e-19
Identity = 57/167 (34.13%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI---RYPDPLIKANDTIKLDLETNKITE 612
            H+ R  AP   M+ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR+L D     R   I  +EA++K  ++ +    ++G   +N  DGR I   +      K   T+K++L + +I +
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILD 169          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITE 612
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVD 169          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITE 612
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVD 169          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITE 612
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVD 169          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITE 612
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVD 169          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITE 612
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVD 169          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 55/167 (32.93%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  121 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITE 612
            H+ R   P   ++ K    +  +P++GPH   + +PL +++R+ LK A T RE   I+    VLVD KVR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVD 169          
BLAST of FC868665 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.356e-17
Identity = 62/174 (35.63%), Postives = 88/174 (50.57%), Query Frame = 1
Query:  112 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFD 627
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVD +   D  +P G  DV++IP+ NE +R+L D +G+  L  I  EEA  K  K +R V      I Y  T DGRT    D   K +  +  ++   KI E I  +
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLE 176          
The following BLAST results are available for this feature:
BLAST of FC868665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_PYRCJ2.920e-2034.4630S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4E_METBF4.981e-2033.5330S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_SULSO1.449e-1934.1330S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_SULIY7.193e-1932.9330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN7.193e-1932.9330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM7.193e-1932.9330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL7.193e-1932.9330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK7.193e-1932.9330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIA7.193e-1932.9330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_NANEQ1.356e-1735.6330S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionC31003C04EF AbioticL1 Citrus clementina cDNA clone C31003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868665 ID=FC868665; Name=FC868665; organism=Citrus clementina; type=EST; length=644bp
AGCTAGCAGCGCCTTCGAGTGCATTTAACACTTCGTTTTTGTTTTGCAGG
ACTGTGACACGCCGTTGGCGAATCCACGCTCAGGCTCACGAACACAAAAA
TGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCAC
TGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGG
GCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGCAACC
GCTTGAAGTATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAA
CGACATGTGTTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGC
TGGGTTCATGGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTC
TCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAG
GAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAA
GGGAATCCCTTACATCAACACTTATGATGGGAGGACTATTCGCTACCCAG
ACCCACTCATCAAGGCCAATGATACCATCAAGCTGGACCTGGAGACTAAC
AAGATCACCGAGTTCATCAAGTTTGATGTTGGAAATGTTGTGAT
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